Commits · 833662072f1c2924d46f5fc49613692ff08e347f · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Feb 01, 2023.

01 Nov, 2001 3 commits
- Added functions to search for Bands without Karyotype · 83366207
  Web Admin authored Nov 01, 2001
  
  83366207
- working version of the script · 106a3f27
  Arek Icrapzych authored Nov 01, 2001
  
  106a3f27
- Added call to base class constructor · ba5c9e80
  Stephen Searle authored Nov 01, 2001
  
  ba5c9e80
31 Oct, 2001 5 commits
- Added a method get_all_blastpFeatures · 836af2c4
  Emmanuel Mongin authored Oct 31, 2001
  
  836af2c4
- Added a bit of doc · 39588df5
  Emmanuel Mongin authored Oct 31, 2001
  
  39588df5
- take download from jim kents db and upload it into maps database. · 31a0a3e4
  Arne Stabenau authored Oct 31, 2001
  
  31a0a3e4
- get_all_unigene_features is used only for sage mapping. it relies on a hacked... · 2ba02985
  Lukasz Huminiecki authored Oct 31, 2001
```
get_all_unigene_features is used only for sage mapping. it relies on a hacked unigene_feature table which is a sunset of feature table prepared only for mapping. I addedd "where f.score > 300" because we we need it to work faster. consult Lukasz or Arek before removing this method
```
  2ba02985
- Pffu hadn't commited this script for 7 months... you even don't want to know... · 2311a2e6
  Emmanuel Mongin authored Oct 31, 2001
```
Pffu hadn't commited this script for 7 months... you even don't want to know where I've foind teh right version.
```
  2311a2e6
30 Oct, 2001 11 commits
- removed join to stable ids in virtual trans · aacb9761
  Arek Icrapzych authored Oct 30, 2001
  
  aacb9761
- VirtualTranscripts groups now by internal_id · e3e2b3f5
  Arek Icrapzych authored Oct 30, 2001
  
  e3e2b3f5
- stable id fixes · 3ef81942
  Arek Icrapzych authored Oct 30, 2001
  
  3ef81942
- superfluous use Carp · 459823b4
  Philip Lijnzaad authored Oct 30, 2001
  
  459823b4
- added stable id setting · a1f37601
  Arek Icrapzych authored Oct 30, 2001
  
  a1f37601
- stable id/db id mapping now goes to txt file · 81a85660
  Arek Icrapzych authored Oct 30, 2001
  
  81a85660
- Made stable_id settable. Doesnt store in the database yet. · 5584dc19
  Arne Stabenau authored Oct 30, 2001
  
  5584dc19
- made stable id settable in Transcript. · 282d46b6
  Arne Stabenau authored Oct 30, 2001
```
Doesnt store in database yet.
```
  282d46b6
- Changed the features names · e34b1ad1
  Emmanuel Mongin authored Oct 30, 2001
  
  e34b1ad1
- Get now the feature name from gff_source · 5612d6bb
  Emmanuel Mongin authored Oct 30, 2001
  
  5612d6bb
- Added a new method to get Profile features · 420c0257
  Emmanuel Mongin authored Oct 30, 2001
  
  420c0257
29 Oct, 2001 3 commits
- added DBEntryAdaptor use statement and other little fixes · b3c41457
  Arek Icrapzych authored Oct 29, 2001
  
  b3c41457
- small typo corrected · 68439e5e
  Eduardo Eyras authored Oct 29, 2001
  
  68439e5e
- some minor modifications; new examples of use added · a1c4bc21
  Eduardo Eyras authored Oct 29, 2001
  
  a1c4bc21
26 Oct, 2001 3 commits
- more exon_comparison methods included · 6c558844
  Eduardo Eyras authored Oct 26, 2001
  
  6c558844
- embl new schema dumps now also work · dfe9b93e
  Philip Lijnzaad authored Oct 26, 2001
  
  dfe9b93e
- transcript matching algorithm improved to obtain best reciprocal matches · 527610e3
  Eduardo Eyras authored Oct 26, 2001
  
  527610e3
25 Oct, 2001 6 commits
- a script which can remove exon doublettes from the ensembl database, · e842246b
  Arne Stabenau authored Oct 25, 2001
```
Should be obsolete by now, but even 110 contains about 30 double
exons. (compared to 20000 in the version Im looking at, this
is good )
```
  e842246b
- core_dump for schema 120 works · 08b935e6
  Philip Lijnzaad authored Oct 25, 2001
  
  08b935e6
- most of core done (apart from xrefs) · 5a3dcee4
  Philip Lijnzaad authored Oct 25, 2001
  
  5a3dcee4
- updated ensembl tutorial · 27c65bef
  Ewan Birney authored Oct 25, 2001
  
  27c65bef
- carp rather than warn, so emacs compilation-mode can be used to quickly find · 20b360d3
  Philip Lijnzaad authored Oct 25, 2001
```
the error
```
  20b360d3
- lite 120 dumps OK · ff4d9974
  Philip Lijnzaad authored Oct 25, 2001
  
  ff4d9974
24 Oct, 2001 5 commits
- merged with ^W ^W copied the branch version to head. · dd43e161
  Philip Lijnzaad authored Oct 24, 2001
  
  dd43e161
- to_String() method modified to include the contig_id where the transcript... · 58fc2270
  Eduardo Eyras authored Oct 24, 2001
```
to_String() method modified to include the contig_id where the transcript sits; useful for annotators
```
  58fc2270
- to_String() method modified to include the contig_id where the gene sits; useful for annotators · c0db6e90
  Eduardo Eyras authored Oct 24, 2001
  
  c0db6e90
- some stats added that tells the percentage of transcripts per number of missing exons · 83958af1
  Eduardo Eyras authored Oct 24, 2001
  
  83958af1
- Added MapGenes.pm. It builds envelopes around exons, which contain · caa7f539
  Arne Stabenau authored Oct 24, 2001
```
all Exons of the genes they are from.
Maps genes inside this envelopes.
```
  caa7f539
23 Oct, 2001 4 commits
- changed id to dbID · d0aa5daf
  Arek Icrapzych authored Oct 23, 2001
  
  d0aa5daf
- new method added 'find_missing_Exons' that pairs up transcripts and finds... · 06939002
  Eduardo Eyras authored Oct 23, 2001
```
new method added 'find_missing_Exons' that pairs up transcripts and finds missing exons, exact exon matches, mismatches... Some stats will be added later
```
  06939002
- added exon internal ids · 229c659b
  Arek Icrapzych authored Oct 23, 2001
  
  229c659b
- fixed internal id on virtual transcript · c2bd2244
  Arek Icrapzych authored Oct 23, 2001
  
  c2bd2244