Commits · 838c24fabdd2ea819cc5983725b5c7504d019b20 · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Feb 01, 2023.

08 Dec, 2004 1 commit
- Updated to use exonerate 0.9 · 838c24fa
  Glenn Proctor authored Dec 08, 2004
  
  838c24fa
22 Oct, 2004 1 commit
- Changes to RYO format output needed for calculating identities to go into identity_xref; · 1d7ab724
  Glenn Proctor authored Oct 22, 2004
  
  1d7ab724
18 Oct, 2004 1 commit
- Bug fix: was calling options() rather than $self->options() and so getting the... · 7d378dac
  Glenn Proctor authored Oct 18, 2004
```
Bug fix: was calling options() rather than $self->options() and so getting the wrong set of options sometimes.
```
  7d378dac
13 Oct, 2004 2 commits
- LSF job number is now stored in standard output and error file names to prevent ambiguities. · 2be298aa
  Glenn Proctor authored Oct 13, 2004
  
  2be298aa
- Exonerate output files now indude sequence type (dna or prot) to allow... · 41c621f9
  Glenn Proctor authored Oct 13, 2004
```
Exonerate output files now indude sequence type (dna or prot) to allow determination of what sort of Ensembl objects to link them to when building the object_xref table.
```
  41c621f9
11 Oct, 2004 2 commits
- More tweaks - some places need path, some need just filename. · e1ad7a99
  Glenn Proctor authored Oct 11, 2004
  
  e1ad7a99
- Minor tweaks to get it working with BasicMapper. · 74b10270
  Glenn Proctor authored Oct 11, 2004
```
calculate_num_jobs now returns at least 1 job.
```
  74b10270
07 Oct, 2004 1 commit
- More informative output · 83a0c150
  Glenn Proctor authored Oct 07, 2004
  
  83a0c150
06 Oct, 2004 1 commit
- Base class with most of exonerate functionality and overridable methods · 31c60b77
  Glenn Proctor authored Oct 06, 2004
  
  31c60b77