GitLab

modified to support schema changes in release 52 (new columns in external_db and dna_align_feature tables)

modified method get_species_and_object_type to retrieve ExonAdaptor as well and changed implementation to make it easier to maintain

changes introduced in release 52: new column description in external_db and new column in dna_align_feature

Modified $cs->equals to cope with DAS::CoordSystem

  When testing for existance of an object xref entry with
  linkage_annotation, treat NULLs as equals.

+ some formatting.

extra number (used by Ensembl Genomes) after the word "core", as in
"schizzosachromyces_pombe_core_0_51_1a".

Passes unit tests.

ignore_release arg added to gene store . It was set to 1 before but can now be passed, default is still set to 1

Removed empty line.

Removed trailing spaces.

tweaked AffyAlign
removed AlignAffyProbe & AlignAffy

firstEF added

description added for Uniprot_non_vertebrate