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  1. 05 May, 2010 2 commits
  2. 22 Apr, 2010 1 commit
    • Andreas Kusalananda Kähäri's avatar
      In get_all_alternative_translations(): · 755ce7c3
      Andreas Kusalananda Kähäri authored
        We know that fetch_all_by_Transcript() (on a TranslationAdaptor) will
        return a list of translations, where the first one will always be the
        canonical translation (if there is one).  Make use of this fact to
        make the routine slightly quicker.
      755ce7c3
  3. 20 Apr, 2010 2 commits
  4. 01 Apr, 2010 1 commit
  5. 30 Mar, 2010 1 commit
  6. 29 Mar, 2010 1 commit
    • Andreas Kusalananda Kähäri's avatar
      Added method get_all_alternative_translations(): · a729a87b
      Andreas Kusalananda Kähäri authored
        Args       : None
        Example    :
      
          my @alt_translations =
            @{ $transcript->get_all_alternative_translations() };
      
        Description:  Fetches all alternative translations defined for this
                      transcript.  The canonical translation is not returned.
      
        Returntype : Array reference to Bio::EnsEMBL::Translation
        Exceptions : None
        Caller     : General
        Status     : Stable
      
      
      Added method add_alternative_translation():
      
        Args       : Bio::EnsEMBL::Translation $translation
        Example    :
      
          $transcript->add_alternative_translation($translation);
      
        Description: Adds an alternative translation to this transcript.
        Returntype : None
        Exceptions : None
        Caller     : General
        Status     : Stable
      a729a87b
  7. 04 Feb, 2010 1 commit
  8. 02 Feb, 2010 1 commit
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  13. 05 May, 2009 1 commit
  14. 05 Mar, 2009 1 commit
  15. 04 Mar, 2009 1 commit
  16. 11 Nov, 2008 1 commit
    • Andreas Kusalananda Kähäri's avatar
      By request from Ensembl Genomes: · 11c6ac6c
      Andreas Kusalananda Kähäri authored
      In translate():
      
        Allow for seq_region attributes 'complete5' and 'complete3' to be
        fetched and used.  These will be fetched from the slice and used in
        the call to Bio::PrimarySeqI::translate() (see the documentation for
        that BioPerl module).
      11c6ac6c
  17. 07 Nov, 2008 1 commit
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