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  We know that fetch_all_by_Transcript() (on a TranslationAdaptor) will
  return a list of translations, where the first one will always be the
  canonical translation (if there is one).  Make use of this fact to
  make the routine slightly quicker.

get_all_alternative_translations().

transcript does not have an associated adaptor.

  Args       : None
  Example    :

    my @alt_translations =
      @{ $transcript->get_all_alternative_translations() };

  Description:  Fetches all alternative translations defined for this
                transcript.  The canonical translation is not returned.

  Returntype : Array reference to Bio::EnsEMBL::Translation
  Exceptions : None
  Caller     : General
  Status     : Stable


Added method add_alternative_translation():

  Args       : Bio::EnsEMBL::Translation $translation
  Example    :

    $transcript->add_alternative_translation($translation);

  Description: Adds an alternative translation to this transcript.
  Returntype : None
  Exceptions : None
  Caller     : General
  Status     : Stable

get_all_Exons( '-constitutive' => 1 ).

Formatting of SYNOPSIS code.

Passes unit tests.

In translate():

  Allow for seq_region attributes 'complete5' and 'complete3' to be
  fetched and used.  These will be fetched from the slice and used in
  the call to Bio::PrimarySeqI::translate() (see the documentation for
  that BioPerl module).

  When removing the final stop codon from the mRNA (if present), use the
  codon table properly, i.e. do not assume we're using codon table 1.

  Format it.

  The method never actually throws an exception.

fails, the feature is reconstructed from transforms of the unagpped
components of the feature
- Added some checks to Transcript/Exon transform that warns and skips
supporting features that do not transform successfully

Added optional argument to get_all_DBEntries and get_all_DBLinks which is the database name. Use like in sql statment so percentage sign can be used for wild cards etc.