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  1. 19 Aug, 2002 3 commits
    • Graham McVicker's avatar
      created base align feature adaptor as a base class for all align feature adaptors · 92a3aeb1
      Graham McVicker authored
      updated ProteinAlignFeatureAdaptor DnaAlignFeatureAdaptor to extend new BaseAlignFeatureAdaptor thereby eliminating quite a few lines of duplicated code
    • Laura Clarke's avatar
      Dna/ProteinAlignFeatureAdaptor - made sure dbID is given to object after storage · aa6cf1d7
      Laura Clarke authored
      ExonAdaptor this now expects to store new style supporting features is, storing alignfeatures then appropriate idss in supporting feature table which is now a linkage table
      warning all other code for supporting features will be broken if you are using a new style supporting feature table or the store method will be broken if you are using an old style supporting feature table this will hopefully be fixed soon so update your supporting feature tables!
    • Laura Clarke's avatar
      · 8b109078
      Laura Clarke authored
      AssemblyMapper, altereed checking of seq->start to allow for negative numbers
      AlignFeatures, added coordinate transforms, only slice->rawcontig implemented currently plus otehr methods to make new supportting feature storage work like dbID and contig
      Exon, altered supporting feature storage
      FeaturePair remove cigar accessor as it is just confusing!
  2. 16 Aug, 2002 4 commits
  3. 15 Aug, 2002 8 commits
  4. 14 Aug, 2002 16 commits
  5. 13 Aug, 2002 5 commits
  6. 12 Aug, 2002 4 commits