Commits · 92c83fa7bd5be92ed39e24b091f25dc76be29a1e · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Feb 09, 2023.

21 Apr, 2008 1 commit
- added -linkage_annotation parameter · 92c83fa7
  Nathan Johnson authored Apr 21, 2008
  
  92c83fa7
27 Jul, 2007 1 commit
- Added support for secondary_db_name, secondary_db_table fields in external_db. · 0c74b2a0
  Glenn Proctor authored Jul 27, 2007
  
  0c74b2a0
04 May, 2007 1 commit
- typo fixed · 36bf4a4a
  Ian Longden authored May 04, 2007
  
  36bf4a4a
07 Mar, 2007 1 commit
- Added type. · 97486b55
  Glenn Proctor authored Mar 07, 2007
  
  97486b55
12 Oct, 2006 1 commit
- Removed xref priority. · ec038cbb
  Glenn Proctor authored Oct 12, 2006
  
  ec038cbb
22 Sep, 2006 2 commits
- Check adaptor is there before using it. · a56041e0
  Glenn Proctor authored Sep 22, 2006
  
  a56041e0
- get_all_synonyms now lazy-loads synonyms if required. · 330c5b5a
  Glenn Proctor authored Sep 22, 2006
  
  330c5b5a
01 Sep, 2006 1 commit
- Added xref_priority (can't just call it priority as this is already used in external_db. · 779ead33
  Glenn Proctor authored Sep 01, 2006
  
  779ead33
08 Jun, 2006 1 commit
- better pod · 8bf5bb43
  Patrick Meidl authored Jun 08, 2006
  
  8bf5bb43
27 Apr, 2006 1 commit
- Check for defined info_type before adding it to display name. · e984a733
  Glenn Proctor authored Apr 27, 2006
  
  e984a733
26 Apr, 2006 1 commit
- no uninitialized warnings · 3f81cce3
  Patrick Meidl authored Apr 26, 2006
  
  3f81cce3
23 Feb, 2006 1 commit
- Added info_type and info_text to xref. · 1f63d134
  Glenn Proctor authored Feb 23, 2006
  
  1f63d134
21 Feb, 2006 1 commit
- Merged branch-mysql5 back into HEAD · 199ec320
  Glenn Proctor authored Feb 21, 2006
  
  199ec320
12 Aug, 2005 1 commit
- status reports added plus some tiding up of docs · d1b8f7f5
  Ian Longden authored Aug 12, 2005
  
  d1b8f7f5
02 Aug, 2005 1 commit
- Added db_display_name · 754a708d
  Glenn Proctor authored Aug 02, 2005
  
  754a708d
27 May, 2005 1 commit
- Added support for primary_id_linkable and display_id_linkable, as well as priority in external_db. · 43379e50
  Glenn Proctor authored May 27, 2005
  
  43379e50
08 Jul, 2004 1 commit
- bug fix: get_all_synonyms could return undef instead of empty list · ca728354
  Graham McVicker authored Jul 08, 2004
  
  ca728354
16 Jan, 2004 1 commit
- lots of minor POD touchups · 1c7ff2eb
  Graham McVicker authored Jan 16, 2004
  
  1c7ff2eb
09 Jan, 2004 1 commit
- Merged in the new-seqstore into HEAD version · fc6ced68
  Arne Stabenau authored Jan 09, 2004
  
  fc6ced68
23 Jul, 2003 1 commit
- add description tag in the argument of sub new · cbe02044
  juguang authored Jul 23, 2003
  
  cbe02044
04 Jun, 2003 1 commit
- GoXref modifications · 3130038e
  Arne Stabenau authored Jun 04, 2003
  
  3130038e
02 Jun, 2003 1 commit
- new_fast sets synonym arrayref to [] · a70b95b1
  Graham McVicker authored Jun 02, 2003
  
  a70b95b1
17 Mar, 2003 1 commit
- chnaged new_fast · 4810c081
  Brian Gibbins authored Mar 17, 2003
  
  4810c081
31 Oct, 2002 1 commit
- PODs · 2fb89371
  Graham McVicker authored Oct 31, 2002
  
  2fb89371
28 Oct, 2002 1 commit

Graham McVicker authored Oct 28, 2002

renamed Slice::get_landmark_MarkerFeatures to get_all_landmark_MarkerFeatures

d5c4b388

16 Oct, 2002 1 commit
- lists -> listrefs · cb9c682b
  Graham McVicker authored Oct 16, 2002
  
  cb9c682b
03 Oct, 2002 1 commit

Sped up SNP creation more · ca3e670e

Graham McVicker authored Oct 03, 2002

Removed contig_list definition from clone constructor. Ctgs were not retrieved if list was defined

ca3e670e

28 Aug, 2002 1 commit
- pod updated · 1de5aa70
  Arne Stabenau authored Aug 28, 2002
  
  1de5aa70
08 Jul, 2002 1 commit
- use DBLink. · 678e87d8
  David Barnwell authored Jul 08, 2002
  
  678e87d8
18 Apr, 2002 1 commit

Every module changed here has had Bio::Root::RootI changed to Bio::EnsEMBL::Root · ba8ab267

Laura Clarke authored Apr 18, 2002

The only modelue with any significant changes other than that is Transcript where moltype
has been changed to alphabet due to another change in Bioperl 1.0

ba8ab267

03 Feb, 2002 1 commit
- Added the status method in DBEntry · 2399d579
  Emmanuel Mongin authored Feb 03, 2002
  
  2399d579
08 Jun, 2001 1 commit
- got red of the url_pattern column in externalDB, adapted DBEntry and DBEntryAdaptor · 39e89568
  Emmanuel Mongin authored Jun 08, 2001
  
  39e89568
11 Apr, 2001 1 commit

Change quite a lot of stuff to try to comply with the new DBentry schema. Also... · ffb686da

Emmanuel Mongin authored Apr 11, 2001

Change quite a lot of stuff to try to comply with the new DBentry schema. Also added new methods in DBEntry (display_id) and in DBEntryAdaptor (few methods to get geneids, ... out with a DBEntry).

E.

ffb686da

05 Apr, 2001 1 commit
- Added one method and one inheritance in the object to comply with DBlink · dca1026a
  Emmanuel Mongin authored Apr 05, 2001
```
bioperl requirement

E.
```
  dca1026a
03 Apr, 2001 3 commits
- DBLink functions added, for compatibility with BioPerl. · 20a82cbd
  Arne Stabenau authored Apr 03, 2001
  
  20a82cbd
- bugfix, added dump function. · cc22c776
  Arne Stabenau authored Apr 03, 2001
  
  cc22c776
- better tested DBEntry. · 0cd2d5a9
  Arne Stabenau authored Apr 03, 2001
  
  0cd2d5a9
27 Mar, 2001 1 commit
- renamed ExternalObject to DBEntry / Adaptor · a8bb17c9
  Arne Stabenau authored Mar 27, 2001
  
  a8bb17c9