This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated .
  1. 16 May, 2005 1 commit
  2. 29 Apr, 2004 1 commit
    • Laura Clarke's avatar
      · 2ee1c609
      Laura Clarke authored
      bug fix in Bio::EnsEMBL::Feature
      added import of warning method into DnaAlignFeatureAdaptor
      2ee1c609
  3. 09 Jan, 2004 1 commit
  4. 17 Jul, 2003 1 commit
  5. 19 Mar, 2003 1 commit
  6. 28 Jan, 2003 1 commit
  7. 16 Jan, 2003 1 commit
  8. 03 Jan, 2003 1 commit
  9. 18 Oct, 2002 1 commit
  10. 17 Oct, 2002 1 commit
  11. 11 Oct, 2002 1 commit
  12. 07 Oct, 2002 1 commit
  13. 03 Oct, 2002 1 commit
  14. 01 Oct, 2002 2 commits
  15. 26 Sep, 2002 1 commit
  16. 23 Sep, 2002 1 commit
  17. 19 Sep, 2002 1 commit
    • Graham McVicker's avatar
      Improved speed of feature retrieval by: · 1b0e7c46
      Graham McVicker authored
      -'Flatening' FeaturePair object so that it no longer contains 2 SeqFeatures; It is now isa SeqFeature with some additional Hit attributes (object still bhaves as if it contained two features
      -Adding 'fast' constructors to DnaDnaAlignFeatures and PepDnaAlignFeatures
      -Some other minor tweaks such as using bind columns instead of fetchrow_hashref
      1b0e7c46
  18. 12 Sep, 2002 1 commit
  19. 11 Sep, 2002 2 commits
  20. 29 Aug, 2002 1 commit
    • Graham McVicker's avatar
      more Pods · a0e51901
      Graham McVicker authored
      and Updated DBConnection so that get_adaptor no longer checks the object type of adaptors
      a0e51901
  21. 21 Aug, 2002 1 commit
  22. 19 Aug, 2002 2 commits
  23. 09 Aug, 2002 1 commit
  24. 29 Jul, 2002 1 commit
  25. 25 Jul, 2002 1 commit
  26. 23 Jul, 2002 1 commit
  27. 12 Jul, 2002 1 commit
  28. 19 Jun, 2002 1 commit
  29. 01 May, 2002 1 commit
    • Laura Clarke's avatar
      AnalysisAdaptor - logic_name must be unique so fetch_by_logic_name now only... · 4fbe162b
      Laura Clarke authored
      AnalysisAdaptor - logic_name must be unique so fetch_by_logic_name now only returns one analysis object
      DnaAlignFeatureAdaptor - formatting print statements etc
      ProteinAlignFeatureAdaptor - Now follows the same format as DnaAlignFeatureAdaptor, has methods to fetch by contig, slice and assembly location and when constrainted by score
      or percent id all methods can take an optional type which is logic name
      RepeatFeatureAdaptor
      PredictionTranscriptAdaptor all have methods which fetch by slice, contig_id and assembly location and each method has optional type which should be logic_name
      SimpleFeatureAdaptor
      4fbe162b
  30. 29 Apr, 2002 1 commit
  31. 25 Apr, 2002 2 commits
  32. 18 Apr, 2002 1 commit
  33. 17 Apr, 2002 1 commit
  34. 16 Apr, 2002 1 commit
  35. 11 Apr, 2002 1 commit
  36. 10 Apr, 2002 1 commit