Commits · 99a3b25edb7421c9594a7edf434f4b1dd45b579a · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Feb 01, 2023.

14 Aug, 2012 1 commit
- We are providing $! information when we have not been able to print to a file handle · 99a3b25e
  Andy Yates authored Aug 14, 2012
  
  99a3b25e
18 Jul, 2012 1 commit
- 2 spacing not 4 spacing · 2ffc9730
  Andy Yates authored Jul 18, 2012
  
  2ffc9730
14 Jun, 2012 1 commit
- Removed use of SeqDumper and replaced it with our own FASTASerializer. · 4e7daed7
  Kieron Taylor authored Jun 14, 2012
  
  4e7daed7
15 May, 2012 1 commit

. Issue caused by 1 length sequences. Fixed by changing the logic... · 07bd3816

Andy Yates authored May 15, 2012

ENSCORESW-140. Issue caused by 1 length sequences. Fixed by changing the logic in fasta serialiser. Test cases now assert for length 1 seqs and for other potential scenarios.

07bd3816

17 Apr, 2012 2 commits
- Bug created and I didn't run the test cases. · f50b9edf
  Andy Yates authored Apr 17, 2012
  
  f50b9edf
- Getter/setter for the header function · acf08a4a
  Andy Yates authored Apr 17, 2012
  
  acf08a4a
10 Apr, 2012 2 commits
- Testing if avoiding formatted writer speeds up our serialiser · 21bde5c0
  Andy Yates authored Apr 10, 2012
  
  21bde5c0
- Header function should not be responsbile for the addition of a > for the... · 33bd4df2
  Andy Yates authored Apr 10, 2012
```
Header function should not be responsbile for the addition of a > for the FASTA header. That's the serailisers responsiblity
```
  33bd4df2
02 Mar, 2012 1 commit
- Incorrect name method called in Bio::Seq compliant objects. Replaced with display_id. · d93f0968
  Kieron Taylor authored Mar 02, 2012
  
  d93f0968
22 Feb, 2012 1 commit
- Added direct chunk size and linewidth assignments to constructor. · 92823895
  Kieron Taylor authored Feb 22, 2012
  
  92823895
15 Feb, 2012 1 commit
- Minor tweak to custom header use. · f9953b00
  Kieron Taylor authored Feb 15, 2012
  
  f9953b00
17 Jan, 2012 1 commit
- Added custom header override method. Updated documentation to reflect this. · 80188582
  Kieron Taylor authored Jan 17, 2012
  
  80188582
16 Jan, 2012 1 commit
- Minor nomenclature tweaks, and better support for Bio::Seq objects · ed50c2d0
  Kieron Taylor authored Jan 16, 2012
  
  ed50c2d0
12 Jan, 2012 2 commits
- Added header override, to prevent default printing. Useful in case of very custom header functions. · 00e7cc8c
  Kieron Taylor authored Jan 12, 2012
  
  00e7cc8c
- Altered comments to include possibility of Bio::PrimarySeqI objects besides Slice. Untested. · dd22ed0f
  Kieron Taylor authored Jan 12, 2012
  
  dd22ed0f
11 Jan, 2012 1 commit

Significant changes to IO::Serializer and subclasses. · bc9e84d2

Kieron Taylor authored Jan 11, 2012

Introduction of new FASTASerializer to replace SeqDumper's FASTA capability. Other formats remain SeqDumper's responsibility.

bc9e84d2