Commits · a4acb2998f45149356890c2a2ee9eb447ae1236d · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Jul 04, 2022.

03 Jul, 2018 1 commit
- update to latest schema · a4acb299
  Magali Ruffier authored Jul 03, 2018
  
  a4acb299
02 Jul, 2018 2 commits
- Merge pull request #257 from muffato/master · 9a09f02e
  Magali Ruffier authored Jul 02, 2018
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The Compara API can deal with Slice objects directly
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  9a09f02e
- The Compara API can deal with Slice objects directly · b520b72d
  Matthieu Muffato authored Jul 02, 2018
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This also gets rid of the deprecation warning of
fetch_all_by_GenomeDB_region
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  b520b72d
29 Jun, 2018 8 commits
- Merge pull request #250 from Ensembl/bugfix/cpanfile_update · b4d7d3e8
  Matthew Laird authored Jun 29, 2018
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fixed cpanfile syntax
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  b4d7d3e8
- Merge pull request #256 from Ensembl/bugfix/default_aln_type · f218e254
  Matthew Laird authored Jun 29, 2018
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ENSCORESW-2758: default align type is NULL
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  f218e254
- Correct title · 9756a616
  Magali Ruffier authored Jun 29, 2018
  
  9756a616
- Merge pull request #247 from Ensembl/bugfix/reactome_acc · 10d791a5
  Matthew Laird authored Jun 29, 2018
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Bugfix/reactome acc
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  10d791a5
- Merge pull request #246 from tgrego/seq_ont_mapper_deprecation · b3541920
  Matthew Laird authored Jun 29, 2018
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SequenceOntologyMapper deprecation
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  b3541920
- Merge pull request #253 from at7/pre_release_94_cleanup · 1239645e
  Matthew Laird authored Jun 29, 2018
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Pre release 94 cleanup
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  1239645e
- Merge pull request #248 from Ensembl/feature/biotype_methods · 27b82aca
  Matthew Laird authored Jun 29, 2018
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ENSCORESW-2695: expand methods for REST support
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  27b82aca
- Schema version bump in preparation for branching. · 7bb26054
  Matthew Laird authored Jun 29, 2018
  
  7bb26054
28 Jun, 2018 7 commits
- patch test databases · eafbbc31
  Magali Ruffier authored Jun 28, 2018
  
  eafbbc31
- refactoring of feature_so_acc using constant · 4548a94f
  Tiago Grego authored Jun 28, 2018
  
  4548a94f
- ENSCORESW-2758 : default align type is NULL · 012e65ed
  Magali Ruffier authored Jun 28, 2018
  
  012e65ed
- Merge pull request #255 from Ensembl/bugfix/patch_name · e59c9d4d
  Matthew Laird authored Jun 28, 2018
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fix patch name
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  e59c9d4d
- extend special characters to allow · c4183ecf
  Magali Ruffier authored Jun 28, 2018
  
  c4183ecf
- add deprecation warning to POD · af3e9891
  Anja Thormann authored Jun 28, 2018
  
  af3e9891
- fix patch name · 8cf95391
  Magali Ruffier authored Jun 28, 2018
  
  8cf95391
26 Jun, 2018 1 commit
- Merge pull request #251 from Ensembl/bugfix/variation_patch · 7e889f35
  Matthew Laird authored Jun 26, 2018
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Apply missing MySQL test-database patches from 90 to 93
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  7e889f35
25 Jun, 2018 1 commit
- Merge pull request #254 from Ensembl/feature/havana_desc · b00cbe3f
  Matthew Laird authored Jun 25, 2018
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ENSCORESW-2742: clean up descriptions from automatic updates
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  b00cbe3f
22 Jun, 2018 1 commit
- more specific regex · 489a9c0f
  Magali Ruffier authored Jun 22, 2018
  
  489a9c0f
21 Jun, 2018 1 commit
- ENSCORESW-2742 : clean up descriptions from automatic updates · b2d24ede
  Magali Ruffier authored Jun 21, 2018
  
  b2d24ede
20 Jun, 2018 3 commits
- refactored Feature::feature_so_acc to be explicit in caller module · 80dc45d8
  Tiago Grego authored Jun 20, 2018
  
  80dc45d8
- feature_so_acc explicit in caller module · eb068001
  Tiago Grego authored Jun 20, 2018
  
  eb068001
- updated Slice and UTR to have package so lookup table · 93a2f7bf
  Tiago Grego authored Jun 20, 2018
  
  93a2f7bf
19 Jun, 2018 6 commits
- update deprecation date · 91cf5f65
  Anja Thormann authored Jun 19, 2018
  
  91cf5f65
- update deprecation date · 8e3f4791
  Anja Thormann authored Jun 19, 2018
  
  8e3f4791
- remove get_by_strain in e95 when code that calls the method is also · 23edaf1b
  Anja Thormann authored Jun 19, 2018
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removed
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  23edaf1b
- remove tests for deleted code · 278b36ca
  Anja Thormann authored Jun 19, 2018
  
  278b36ca
- get_all_VariationFeatures cannot be depreacted · d2aa9f66
  Anja Thormann authored Jun 19, 2018
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used in webcode on AlignSlice object
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  d2aa9f66
- remove deprecated code · ec1bc6a7
  Anja Thormann authored Jun 19, 2018
  
  ec1bc6a7
13 Jun, 2018 2 commits
- Apply missing MySQL test-database patches from 90 to 93 · e4d7240a
  Marek Szuba authored Apr 30, 2018
  
  e4d7240a
- fixed cpanfile syntax · 590c3240
  Benjamin Warren authored Mar 27, 2018
  
  590c3240
12 Jun, 2018 2 commits
- ENSCORESW-2695 : expand methods for REST support · e69b49d8
  Magali Ruffier authored Jun 12, 2018
  
  e69b49d8
- ENSCORESW-2723 : skip dodgy descriptions · 802ec0c0
  Magali Ruffier authored Jun 12, 2018
  
  802ec0c0
11 Jun, 2018 5 commits
- updated DEPRECATED.md · a3e67214
  Tiago Grego authored Jun 11, 2018
  
  a3e67214
- added exception when feature_so_acc is unavailable · 2f5a5b27
  Tiago Grego authored Jun 11, 2018
  
  2f5a5b27
- fix of hash value extraction · 62613547
  Tiago Grego authored Jun 11, 2018
  
  62613547
- Merge pull request #245 from Ensembl/feature/havana_desc · 71dab88b
  Magali Ruffier authored Jun 11, 2018
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ENSCORESW-2742: keep existing descriptions. Only for merged species
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  71dab88b
- Merge pull request #244 from james-monkeyshines/master · fb189206
  Magali Ruffier authored Jun 11, 2018
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Don't version_check metadata db
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  fb189206