Commits · a8ce5f25c5c8bcff849c8d678c84ca46ad026038 · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Feb 09, 2023.

09 Apr, 2001 4 commits
- *** empty log message *** · a8ce5f25
  Philip Lijnzaad authored Apr 09, 2001
  
  a8ce5f25
- warning · 285e84d7
  Philip Lijnzaad authored Apr 09, 2001
  
  285e84d7
- comments · 61b3d093
  Philip Lijnzaad authored Apr 09, 2001
  
  61b3d093
- Now it should work... · 694f6301
  Emmanuel Mongin authored Apr 09, 2001
  
  694f6301
08 Apr, 2001 2 commits
- Some modifications on the scripts which run the · 74ecb4fb
  Emmanuel Mongin authored Apr 08, 2001
```
protein annotation.
```
  74ecb4fb
- Mapping going on, many changes done... · 58fc4a4b
  Emmanuel Mongin authored Apr 08, 2001
  
  58fc4a4b
07 Apr, 2001 4 commits
- Mapping getting bigger and bigger, added a script which · 7671f083
  Emmanuel Mongin authored Apr 07, 2001
```
prepare the data for scop mapping.

E.
```
  7671f083
- Added a small script needed in the mapping process · 123a2a50
  Emmanuel Mongin authored Apr 07, 2001
  
  123a2a50
- added function to fetch chr length from a vc via the karyotype DB adaptor · 3656484b
  Web Admin authored Apr 07, 2001
  
  3656484b
- additions to StaticContig to make Cext direct staticvc get to work. Now to... · aa561e3a
  Ewan Birney authored Apr 07, 2001
```
additions to StaticContig to make Cext direct staticvc get to work. Now to test on alphas on real data
```
  aa561e3a
06 Apr, 2001 3 commits
- works finally ... one small bug still there, if a peptide of one source is · ce81c278
  Philip Lijnzaad authored Apr 06, 2001
```
missing, the whole ipi disappears (happens for ENSG00000105155 and
ENSG00000110755, which for some reason were not in the peptide dump). Ignored
for now.
```
  ce81c278
- added all the tricks i had to do manually; not tested though · 4c8a58d2
  Philip Lijnzaad authored Apr 06, 2001
  
  4c8a58d2
- did anyone notice that I hadnt added WebTranscript... probably not... I think... · 2dd67fcb
  Ewan Birney authored Apr 06, 2001
```
did anyone notice that I hadnt added WebTranscript... probably not... I think i got away with it this time...
```
  2dd67fcb
05 Apr, 2001 10 commits
- new go faster has _context calls for start/end exons --- needs testing now by web team · cf8a4cb9
  Ewan Birney authored Apr 05, 2001
  
  cf8a4cb9
- intermediate commit, doesn't work · f1abaceb
  Philip Lijnzaad authored Apr 05, 2001
  
  f1abaceb
- not tested · e58423e8
  Philip Lijnzaad authored Apr 05, 2001
  
  e58423e8
- change of name and another test · 92c2252b
  Imre Vastrik authored Apr 05, 2001
  
  92c2252b
- Some basic changes. · d480efbe
  Emmanuel Mongin authored Apr 05, 2001
  
  d480efbe
- adapted the protein test to the new Entry schema · 25afa785
  Emmanuel Mongin authored Apr 05, 2001
```
E.
```
  25afa785
- Made protein Adaptor with the new DBentry schema · f5b05f06
  Emmanuel Mongin authored Apr 05, 2001
```
Corrected one call in DBEntryAdaptor

E.
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  f5b05f06
- Added one method and one inheritance in the object to comply with DBlink · dca1026a
  Emmanuel Mongin authored Apr 05, 2001
```
bioperl requirement

E.
```
  dca1026a
- new go-faster get_all_Genes_exononly. Need to figure out how to get the start/end points · f0c5a453
  Ewan Birney authored Apr 05, 2001
  
  f0c5a453
- a test which checks pritein length and presence of stops · 892a4b9f
  Imre Vastrik authored Apr 05, 2001
  
  892a4b9f
04 Apr, 2001 10 commits
- parse_group_field now from Bio::EnsEMBL::Utils::igi_utils::parse_group_field, · 69c08cfb
  Philip Lijnzaad authored Apr 04, 2001
```
is tested and works
```
  69c08cfb
- the read_igis_from_summary factored out into utils; tested and works · 5d79b4fa
  Philip Lijnzaad authored Apr 04, 2001
  
  5d79b4fa
- some refactoring · 2bc80ac2
  Philip Lijnzaad authored Apr 04, 2001
  
  2bc80ac2
- Bug in EnsTestDB, see line 254...Thanks Philip · 29029978
  Emmanuel Mongin authored Apr 04, 2001
```
E.
```
  29029978
- added tables objectXref, Xref, externalSynonym, externalDB · 1539cf84
  Emmanuel Mongin authored Apr 04, 2001
  
  1539cf84
- tidying up after Arne - made test suite use DBAdaptor - tests failed - fixed... · d3476b36
  Ewan Birney authored Apr 04, 2001
```
tidying up after Arne - made test suite use DBAdaptor - tests failed - fixed old Obj dependancies. Tidied some stuff in Protein Adaptor
```
  d3476b36
- removed misleading comment · eb2ac084
  James Gilbert authored Apr 04, 2001
  
  eb2ac084
- minor doc fix · 352dbc7c
  James Gilbert authored Apr 04, 2001
  
  352dbc7c
- fixed code which produced warnings · 1ee03c06
  James Gilbert authored Apr 04, 2001
  
  1ee03c06
- removed unused variable · 849f330c
  James Gilbert authored Apr 04, 2001
  
  849f330c
03 Apr, 2001 7 commits
- removed use ....::Obj; · a9d5f98b
  Arne Stabenau authored Apr 03, 2001
  
  a9d5f98b
- removed. Is renamed to DBEntry.pm · 5c2d175a
  Arne Stabenau authored Apr 03, 2001
  
  5c2d175a
- fetch_karyotype_band_start_end · bbf51973
  Web Admin authored Apr 03, 2001
  
  bbf51973
- Move to DBAdaptor instead of Obj please! · 441da085
  Arne Stabenau authored Apr 03, 2001
  
  441da085
- DBLink functions added, for compatibility with BioPerl. · 20a82cbd
  Arne Stabenau authored Apr 03, 2001
  
  20a82cbd
- bugfix, added dump function. · cc22c776
  Arne Stabenau authored Apr 03, 2001
  
  cc22c776
- Store implemented to test it. · 7ce28edc
  Arne Stabenau authored Apr 03, 2001
  
  7ce28edc