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  1. 10 Jan, 2012 1 commit
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  15. 16 Jul, 2010 1 commit
    • Andreas Kusalananda Kähäri's avatar
      Hack: · 888f38d8
      Andreas Kusalananda Kähäri authored
      -  @seqeds = sort { $b->start() <=> $a->start() } @seqeds;
      +  # HACK:   The translation ENSP00000420939 somehow makes the next line
      +  #         bomb out ($a or $b becomes undef) if the start() method
      +  #         is used.  I haven't been able to find out why.  It has 10
      +  #         Selenocysteine seqedits that looks correct.
      +  #         /Andreas (release 59)
      +  my @seqeds = sort { $b->{'start'} <=> $a->{'start'} } @seqeds;
      888f38d8
  16. 12 Jul, 2010 1 commit
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  27. 12 Nov, 2007 1 commit
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  32. 03 Apr, 2007 1 commit
    • Andreas Kusalananda Kähäri's avatar
      Added new methods: · 89fbc961
      Andreas Kusalananda Kähäri authored
          $translation->cdna_start();    # or...
          $translation->cdna_start($transcript);
              # Returns the start position of the translation in cDNA
              # coordinates.  Providing the transcript explicitly speeds
              # things up a bit.  The transcript is used in a call to
              # $exon->cdna_coding_start($transcript);
      
          $translation->cdna_end();    # or...
          $translation->cdna_end($transcript);
              # Returns the end position of the translation in cDNA
              # coordinates.  Providing the transcript explicitly speeds
              # things up a bit.  The transcript is used in a call to
              # $exon->cdna_coding_end($transcript);
      
      
          $translation->genomic_start();
              # Returns the start position of the translation in genomic
              # coordinates on the forward strand.
      
          $translation->genomic_end();
              # Returns the end position of the translation in genomic
              # coordinates on the forward strand.
      89fbc961
  33. 12 Feb, 2007 1 commit