Commits · bcb7c7ff81a43a09e316fc0fc66310898d6f10b0 · ensembl-gh-mirror / ensembl · GitLab

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Jan 29, 2023.

16 Mar, 2009 9 commits
- tidy up · bcb7c7ff
  Ian Longden authored Mar 16, 2009
  
  bcb7c7ff
- identity_xref added · b8e7c811
  Ian Longden authored Mar 16, 2009
  
  b8e7c811
- help and a bug fix · a449408d
  Ian Longden authored Mar 16, 2009
  
  a449408d
- · 29507fb0
  Jan-hinnerk Vogel authored Mar 16, 2009
```
warning() instead of throw() if analyiss description does not exist in analysis.description file
```
  29507fb0
- · 2b725e23
  Jan-hinnerk Vogel authored Mar 16, 2009
```
url for IPI for zfish corrected
add. url for zfish added
```
  2b725e23
- removed debugging commands · 4b7e2a21
  Daniel Rios authored Mar 16, 2009
  
  4b7e2a21
- · 3479a570
  Jan-hinnerk Vogel authored Mar 16, 2009
```
comment added for split_tscript etc
```
  3479a570
- dump string into hash reference web_data column · 55d6392a
  Daniel Rios authored Mar 16, 2009
  
  55d6392a
- modified to check hash reference in web_date · 54a11667
  Daniel Rios authored Mar 16, 2009
  
  54a11667
13 Mar, 2009 5 commits
- added method new_fast to allow quick creation of objects avoiding rearrange method · ff5a50b6
  Daniel Rios authored Mar 13, 2009
  
  ff5a50b6
- minor Vega tweaks · 320d2a58
  Steve Trevanion authored Mar 13, 2009
  
  320d2a58
- object_xref.analysis_id default to null · f8685814
  Glenn Proctor authored Mar 13, 2009
  
  f8685814
- Default to null · cd2f343d
  Glenn Proctor authored Mar 13, 2009
  
  cd2f343d
- Remove NOT NULL constraint on object_xref.analysis_id · e262651f
  Glenn Proctor authored Mar 13, 2009
  
  e262651f
12 Mar, 2009 1 commit
- added option to force overwriting attrib_type table · 0bcd02e4
  Daniel Rios authored Mar 12, 2009
  
  0bcd02e4
11 Mar, 2009 1 commit
- Merge post-release patch from branch-ensembl-53 into HEAD. · 4ba7c116
  Andreas Kusalananda Kähäri authored Mar 11, 2009
  
  4ba7c116
09 Mar, 2009 5 commits
- analysis moved onto object_xref from identity_xref, so API modified to look at corect tables etc · 720ae45d
  Ian Longden authored Mar 09, 2009
  
  720ae45d
- analysis moved onto object_xref from identity_xref · 35699be1
  Ian Longden authored Mar 09, 2009
  
  35699be1
- 11 other drosophila species scripts add for x-refs mapping. · 8a1481f6
  Gautier Koscielny authored Mar 09, 2009
  
  8a1481f6
- Code modified to return an array of filenames in method 'build_transcript_and_gene_display_xrefs'. · 7930b3f6
  Gautier Koscielny authored Mar 09, 2009
  
  7930b3f6
- new script to ensure the web_data column can be evaluated into a hash · e7686f3e
  Daniel Rios authored Mar 09, 2009
  
  e7686f3e
06 Mar, 2009 4 commits
- verbose added · ddd666c9
  Ian Longden authored Mar 06, 2009
  
  ddd666c9
- verbosity added plus updating process_status table · f33bf36b
  Ian Longden authored Mar 06, 2009
  
  f33bf36b
- verbose option added and bug fix for official name synonyms · f3bfb6ec
  Ian Longden authored Mar 06, 2009
  
  f3bfb6ec
- verbose option added · 2a61cff6
  Ian Longden authored Mar 06, 2009
  
  2a61cff6
05 Mar, 2009 6 commits
- removed starts_met and has_stop codon from the calculation, not needed any more · a36dca51
  Daniel Rios authored Mar 05, 2009
  
  a36dca51
- Added sub get_species_id_from_species_name · fbf5ff92
  Ian Longden authored Mar 05, 2009
  
  fbf5ff92
- Formatting. · 9b8fe3b1
  Andreas Kusalananda Kähäri authored Mar 05, 2009
  
  9b8fe3b1
- oly do uploading/coordinate xrefs if upload is true · 59895f07
  Ian Longden authored Mar 05, 2009
  
  59895f07
- added new sunroutine to make calling etc similar to other modules · 53d01a05
  Ian Longden authored Mar 05, 2009
  
  53d01a05
- dinsuh sql query · 678db52f
  Ian Longden authored Mar 05, 2009
  
  678db52f
04 Mar, 2009 9 commits
- total rewrite · 9806f5fc
  Ian Longden authored Mar 04, 2009
  
  9806f5fc
- add interpro table data · c518fe9a
  Ian Longden authored Mar 04, 2009
  
  c518fe9a
- WikiGene added plus some moving around of sources and there prioritys · 4efc9876
  Ian Longden authored Mar 04, 2009
  
  4efc9876
- pretty much a total rewrite as we now store the object xref etc inside the xref database now · 614e37f0
  Ian Longden authored Mar 04, 2009
  
  614e37f0
- added getting hgnc aliases and info_type addition to xref table · 38c6e56b
  Ian Longden authored Mar 04, 2009
  
  38c6e56b
- removed default setting as these will be continually incorrect (i.e. for the previous release) · 282abd4f
  Ian Longden authored Mar 04, 2009
  
  282abd4f
- added info_type to xref creation. Not sure if this parser is used anymore though · 3c8b330c
  Ian Longden authored Mar 04, 2009
  
  3c8b330c
- add aliases from previous hgncs · 144d583f
  Ian Longden authored Mar 04, 2009
  
  144d583f
- add aliases for hgnc even if we cannot map them · 6c0455e0
  Ian Longden authored Mar 04, 2009
  
  6c0455e0