Commits · c686f3a1f2fbdd8b4ccb013d944655f5e0172056 · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Feb 06, 2023.

27 Jan, 2004 1 commit
- made dnadb unsettable once set · c686f3a1
  Graham McVicker authored Jan 27, 2004
  
  c686f3a1
12 Jan, 2004 1 commit
- Disabled ProxyGene adaptor for now · 62c7422f
  Graham McVicker authored Jan 12, 2004
  
  62c7422f
09 Jan, 2004 1 commit
- Merged in the new-seqstore into HEAD version · fc6ced68
  Arne Stabenau authored Jan 09, 2004
  
  fc6ced68
30 Oct, 2003 1 commit
- fixed CORE::length warnings in Transcript · 33523202
  James Gilbert authored Oct 30, 2003
```
added TYPE parameter to DBAdaptor constructor
```
  33523202
23 Oct, 2003 1 commit
- Added calls for assembly name/version to slice via DBAdaptor · 132666f5
  Web Admin authored Oct 23, 2003
  
  132666f5
22 Oct, 2003 1 commit

bugfixes for ExternalFeatureAdaptor,support for assembly version/name in meta... · 70a0643d

Web Admin authored Oct 22, 2003

bugfixes for ExternalFeatureAdaptor,support for assembly version/name in meta table, support for Glovar and removed some mysql-only DB dependencies

70a0643d

24 Sep, 2003 1 commit
- EST db fix for no proxy · bc19bd68
  Web Admin authored Sep 24, 2003
  
  bc19bd68
19 Sep, 2003 2 commits
- circular references in AnalysisAdaptor removed · e8c999df
  James Gilbert authored Sep 19, 2003
  
  e8c999df
- moved some stuff out of DBConnection::deleteObj into DBAdaptro::deleteObj · 08a0a4fe
  Graham McVicker authored Sep 19, 2003
```
that could have resulted in errors in other (non-core) DBAdaptors that inherited from DBConnection
```
  08a0a4fe
18 Sep, 2003 1 commit
- cleaned up some circular refs in DBConnection + DBAdaptor · 21ffbbd4
  James Gilbert authored Sep 18, 2003
  
  21ffbbd4
22 Jul, 2003 1 commit
- minor changes, formatting · 76b7ff0a
  Arne Stabenau authored Jul 22, 2003
  
  76b7ff0a
20 Jun, 2003 1 commit
- Added new generic feature adaptor functionality. Made standard adaptors... · 08eefe2f
  Glenn Proctor authored Jun 20, 2003
```
Added new generic feature adaptor functionality. Made standard adaptors overwriteable by user-defined modules
```
  08eefe2f
29 May, 2003 1 commit
- Getting the ArchiveStableId Adaptor · 072d45dc
  Arne Stabenau authored May 29, 2003
  
  072d45dc
24 Apr, 2003 1 commit
- Added External::BlastAdaptor support · 02250d17
  Will Spooner authored Apr 24, 2003
  
  02250d17
14 Apr, 2003 1 commit
- whitespace change · 9acb2f1e
  Colin Kingswood authored Apr 14, 2003
  
  9acb2f1e
13 Mar, 2003 1 commit
- Qtl and QtlFeature Adaptor get functions added · 90df228e
  Arne Stabenau authored Mar 13, 2003
  
  90df228e
06 Mar, 2003 2 commits
- tweaks to make dnadb work better · 8637a77c
  Graham McVicker authored Mar 06, 2003
  
  8637a77c
- *** empty log message *** · 936d9e78
  Tanya Gray authored Mar 06, 2003
  
  936d9e78
05 Mar, 2003 1 commit

· eea79a8d

Laura Clarke authored Mar 05, 2003

added a little more info to the no default assembly error message

eea79a8d

19 Feb, 2003 1 commit
- enabled gene retrieval by analysis type, deprecated/removed lame 'source' calls · b4427c77
  Graham McVicker authored Feb 19, 2003
  
  b4427c77
06 Feb, 2003 1 commit
- removed get_LandmarkMarkerAdaptor method · 423a13f8
  Graham McVicker authored Feb 06, 2003
  
  423a13f8
30 Jan, 2003 1 commit
- removed deprecated methods · 809f1d70
  Graham McVicker authored Jan 30, 2003
  
  809f1d70
29 Jan, 2003 1 commit
- added calls to get new Marker Adaptors · 1cbb6ccf
  Graham McVicker authored Jan 29, 2003
  
  1cbb6ccf
23 Jan, 2003 1 commit
- rolled back accidently committed new marker methods · daeb957a
  Graham McVicker authored Jan 23, 2003
  
  daeb957a
22 Jan, 2003 1 commit
- got rid of a nasty memory leak with DnaAlignFeatures · ec23b296
  Graham McVicker authored Jan 22, 2003
  
  ec23b296
10 Jan, 2003 1 commit
- fixed early cleanup bug in DBAdaptor. dnadb was cleaned up prematurly · da759b8d
  Arne Stabenau authored Jan 10, 2003
  
  da759b8d
06 Dec, 2002 1 commit
- AssemblyMapperAdaptor should come from dnadb (merge from manu's branch change) · 3f7fd6ad
  Graham McVicker authored Dec 06, 2002
  
  3f7fd6ad
04 Dec, 2002 1 commit
- moving from branch · a94df20c
  Web Admin authored Dec 04, 2002
  
  a94df20c
25 Nov, 2002 1 commit
- removed Bio::EnsEMBL::DBSQL::FeatureAdaptor · b8ff5528
  Graham McVicker authored Nov 25, 2002
  
  b8ff5528
22 Nov, 2002 1 commit
- removed deprecated methods · a64aa50e
  Graham McVicker authored Nov 22, 2002
  
  a64aa50e
11 Nov, 2002 1 commit
- SNP db nameing inconsistent · 0fe0fb74
  Arne Stabenau authored Nov 11, 2002
  
  0fe0fb74
30 Oct, 2002 1 commit
- slices from chromosomes, chromosome adaptor caches on name, tests in a second · 75130c9f
  Arne Stabenau authored Oct 30, 2002
  
  75130c9f
25 Oct, 2002 2 commits
- removed potential memory leak problems with external feature adaptors · 5311ca65
  Graham McVicker authored Oct 25, 2002
  
  5311ca65
- ExternalFeatureAdaptor now integrated into API · d36d1cd9
  Graham McVicker authored Oct 25, 2002
```
old ExternalFeatureFactoryI now magically behaves as an ExternalFeatureAdaptor for backwards compatibility
```
  d36d1cd9
18 Oct, 2002 1 commit
- get_RepeatFeatureAdaptor - now gets a RepeatFeatureAdaptor from the dnadb object. · fbca0eb6
  Dan T Andrews authored Oct 18, 2002
  
  fbca0eb6
13 Oct, 2002 1 commit
- Added : in get_SupportingFeatureAdaptor · 2fb593bf
  Stephen Searle authored Oct 13, 2002
  
  2fb593bf
11 Oct, 2002 1 commit
- Renamed some each_xxxx methods to get_all_xxxx · 97a295f3
  Graham McVicker authored Oct 11, 2002
```
Added new SupportingFeatureAdaptor
```
  97a295f3
25 Sep, 2002 1 commit
- SequenceAdaptor now uses dnadb. DnaDB now stored like other dbadaptors to... · 6908fb9d
  Graham McVicker authored Sep 25, 2002
```
SequenceAdaptor now uses dnadb.  DnaDB now stored like other dbadaptors to ensure proper garbage collection
```
  6908fb9d
16 Sep, 2002 2 commits

Fixed 2 references to non-existant modules I was using for testing - oops. · eae67345
Graham McVicker authored Sep 16, 2002

eae67345

Removed most memory leak problems through the creation of a Container object... · 8e428429

Graham McVicker authored Sep 16, 2002

Removed most memory leak problems through the creation of a Container object which is wrapped around the DBAdaptor.  Also moved cache out of Slice object and into GeneAdaptor since to avoid memory leaks caches should only exist in the ObjectAdaptors - not the objects

8e428429