This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git.
Pull mirroring updated .
- 29 Apr, 2019 2 commits
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Tiago Grego authored
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Tiago Grego authored
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- 26 Apr, 2019 2 commits
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Marek Szuba authored
Changed attribute code length to 14 characters.
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Shamika Mohanan authored
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- 25 Apr, 2019 3 commits
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Kieron Taylor authored
Add support for stop codon readthrough as a type of edit.
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Shamika Mohanan authored
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Shamika Mohanan authored
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- 17 Apr, 2019 4 commits
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Shamika Mohanan authored
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Shamika Mohanan authored
Code updated to implement review comments. There is a new package to handle stop codon readthrough in a sequence. Test case has been updated with new regex
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Marek Szuba authored
The previous test-database update missed some patches for the core and variation schemas, which is why Travis jobs keep failing these days.
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Shamika Mohanan authored
ENSCORESW-3110- Code to handle stop codon readthrough in 12 transcripts. The code edits the amino acid sequence to display the stop codon readthrough with an X
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- 15 Apr, 2019 1 commit
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ens-bwalts authored
[ENSCORESW-3077] Travis: Unify configuration of Slack notifications
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- 11 Apr, 2019 2 commits
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ens-bwalts authored
add feature_so_term to Slice.pm, as was added to Feature.pm
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ens-bwalts authored
Patch test databases for release 97, part 2 [master]
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- 10 Apr, 2019 1 commit
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Brandon Walts authored
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- 08 Apr, 2019 1 commit
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Shamika Mohanan authored
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- 05 Apr, 2019 1 commit
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Shamika Mohanan authored
Code updated to implement review comments. There is a new package to handle stop codon readthrough in a sequence. Test case has been updated with new regex
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- 04 Apr, 2019 1 commit
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Marek Szuba authored
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- 03 Apr, 2019 1 commit
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Shamika Mohanan authored
Merge remote-tracking branch 'origin/bugfix/e97_testdb_patches_master' into feature/stop_codon_readthrough_edit This merge will update the schema to version 97 for feature/stop_codon_readthrough_edit
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- 02 Apr, 2019 1 commit
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Marek Szuba authored
The previous test-database update missed some patches for the core and variation schemas, which is why Travis jobs keep failing these days.
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- 01 Apr, 2019 1 commit
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Shamika Mohanan authored
ENSCORESW-3110- Code to handle stop codon readthrough in 12 transcripts. The code edits the amino acid sequence to display the stop codon readthrough with an X
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- 21 Mar, 2019 2 commits
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Marek Szuba authored
Add support for mature RNA products of transcripts (e.g. MicroRNA) to the API and schema
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Marek Szuba authored
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- 20 Mar, 2019 2 commits
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Marek Szuba authored
See ENSCORESW-3054. Only really affects the test suite at this point, in the code proper the prefix only appears in docstrings.
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Marek Szuba authored
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- 19 Mar, 2019 10 commits
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Marek Szuba authored
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Marek Szuba authored
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Marek Szuba authored
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Marek Szuba authored
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Marek Szuba authored
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Marek Szuba authored
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Marek Szuba authored
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Marek Szuba authored
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Marek Szuba authored
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Marek Szuba authored
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- 18 Mar, 2019 5 commits
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Marek Szuba authored
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Marek Szuba authored
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Marek Szuba authored
Apply patch_96_97_{c,d,e}, insert the necessary data into homo_sapiens/core.
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Marek Szuba authored
Three separate patches here: 1. Create Create tables for RNAProduct. Basically renamed copies of Translation tables "translation" and "translation_attrib" plus a new column rnaproduct_type_id, complete with a corresponding table rnaproduct_type, which is used to distinguish between RNA-product types; 2. Add type RNAProduct to object_xref.ensembl_object_type. This is needed to support e.g. miRBase xrefs for microRNAs; 3. Add type rnaproduct to stable_id_event.type. This is needed to support mature RNA products in stable-id mapping.
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Marek Szuba authored
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