Commits · cvs/attic/before_07_merge-on-branch-freeze-july-branch · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated May 28, 2022.

12 Jan, 2001 3 commits
- eval around writing sequences... · 996327d4
  Elia Stupka authored Jan 12, 2001
  
  996327d4
- added get_next_Marker. Still needs testing · d095453b
  Arek Icrapzych authored Jan 12, 2001
  
  d095453b
- Changed regex in get_landmark_MarkerFeatures · fea31d78
  Arek Icrapzych authored Jan 12, 2001
  
  fea31d78
10 Jan, 2001 3 commits
- Removed irritating stderr messages · b67e5408
  Web Admin authored Jan 10, 2001
  
  b67e5408
- cosmetic changes · 416882ee
  Arek Icrapzych authored Jan 10, 2001
  
  416882ee
- added new method - get_landmark_MarkerFeatures on StaticContig for retrieval of D-ids markers. · 0a364624
  Arek Icrapzych authored Jan 10, 2001
```
This method breaks ensembl taboo and uses cross db join :-)
```
  0a364624
09 Jan, 2001 8 commits
- someone unfixed 'gene outside vc ' bug , fixed again :-( · 82253351
  Arek Icrapzych authored Jan 09, 2001
  
  82253351
- added basepair dumping support · 879da1fa
  Ewan Birney authored Jan 09, 2001
  
  879da1fa
- added gene2flat basepair support · 512e3a89
  Ewan Birney authored Jan 09, 2001
  
  512e3a89
- Removed repeatmasking from contig as it is now · 5243bb46
  humpub authored Jan 09, 2001
```
in the interface.
Merges in StaticContig
can use it.
```
  5243bb46
- Merges · 72fb5a59
  humpub authored Jan 09, 2001
```
can use it.
```
  72fb5a59
- Moved repeatmasking method in here so Virtual contigs · e1c364e4
  humpub authored Jan 09, 2001
```
can use it.
```
  e1c364e4
- *** empty log message *** · 801002d3
  humpub authored Jan 09, 2001
  
  801002d3
- fixed 'gene outside vc bug' · efba288c
  Arek Icrapzych authored Jan 09, 2001
  
  efba288c
07 Jan, 2001 1 commit
- Added cheeky little web call (gene_name) to store the name of the transcript's... · 9bb14b23
  James Stalker authored Jan 07, 2001
```
Added cheeky little web call (gene_name) to store the name of the transcript's parent gene for contigview
```
  9bb14b23
04 Jan, 2001 1 commit
- commenting out STDERR prints · 205e3d7d
  Web Admin authored Jan 04, 2001
  
  205e3d7d
02 Jan, 2001 4 commits
- Moved gene mapping script to work with new GeneComparison object · 3c3a7758
  Elia Stupka authored Jan 02, 2001
  
  3c3a7758
- Added brackets · 8b164177
  Elia Stupka authored Jan 02, 2001
  
  8b164177
- committed archive changes · ae7ab730
  Ewan Birney authored Jan 02, 2001
  
  ae7ab730
- added stable id getting function to archive · 02925660
  Ewan Birney authored Jan 02, 2001
  
  02925660
20 Dec, 2000 1 commit
- removed annoying STDERR on Obj · 0dd6fdc1
  Ewan Birney authored Dec 20, 2000
  
  0dd6fdc1
15 Dec, 2000 5 commits
- added command line argument for chromosome · 5156d1a0
  Elia Stupka authored Dec 15, 2000
  
  5156d1a0
- Fixed to get old and new dbs correctly · 95d0231f
  Elia Stupka authored Dec 15, 2000
  
  95d0231f
- Added logfile argument to get_old_Exons · 8cb975bd
  Elia Stupka authored Dec 15, 2000
  
  8cb975bd
- Added documentation (at James's request :) · 98f1f121
  Elia Stupka authored Dec 15, 2000
```
Added tracking on logfile of exons lost in the mapping
```
  98f1f121
- Adding our first (The Right Way (TM)) mapping script · 82c32797
  Elia Stupka authored Dec 15, 2000
  
  82c32797
14 Dec, 2000 2 commits
- Virtual/Contig: added get_old_Genes, fixes to get_old_Exons to uniquify them... · 2d4cd512
  Elia Stupka authored Dec 14, 2000
```
Virtual/Map: no changes
```
  2d4cd512
- Clone: no modification · c730c98f
  Elia Stupka authored Dec 14, 2000
```
Gene_Obj: no modification
RawContig: Lots of fixes to get_old_Exons, catches bugs in clone version numbers, and allows for them
Symmetric..: Takes clone version as an argument
```
  c730c98f
13 Dec, 2000 1 commit
- fixed most bugs in embl/genbank dumping · 724d75e2
  Arek Icrapzych authored Dec 13, 2000
  
  724d75e2
12 Dec, 2000 7 commits
- STDERR output decrufting (again!) · 2112848c
  Tony Cox authored Dec 12, 2000
  
  2112848c
- print STDERR decrufting · fc1e298c
  Tony Cox authored Dec 12, 2000
  
  fc1e298c
- STDERR decrufting · 7cd00879
  Tony Cox authored Dec 12, 2000
  
  7cd00879
- Fixed STDERR crufty messages · 27ac2208
  Tony Cox authored Dec 12, 2000
  
  27ac2208
- Moved call to get_Analysis onto feature_obj bypassing deprecated call and · fe893c2d
  Tony Cox authored Dec 12, 2000
```
annoying STDERR warning
```
  fe893c2d
- forgot sql table addition... · 6e8a8258
  Ewan Birney authored Dec 12, 2000
  
  6e8a8258
- added external id tables · 029aa5dc
  Ewan Birney authored Dec 12, 2000
  
  029aa5dc
11 Dec, 2000 4 commits
- SQL typo fixed · 5dd03add
  Tony Cox authored Dec 11, 2000
  
  5dd03add
- *** empty log message *** · 4cadad44
  Tony Cox authored Dec 11, 2000
  
  4cadad44
- the same fix on repeat features (off-by-33) · ba9c0b11
  Arek Icrapzych authored Dec 11, 2000
  
  ba9c0b11
- fixed off-by-33 bug · ff817941
  Arek Icrapzych authored Dec 11, 2000
  
  ff817941