This project is mirrored from https://github.com/Ensembl/ensembl.git. Pull mirroring updated .
  1. 12 Jun, 2013 2 commits
  2. 16 May, 2013 10 commits
  3. 15 May, 2013 1 commit
  4. 26 Feb, 2013 2 commits
  5. 20 Feb, 2013 4 commits
  6. 19 Feb, 2013 3 commits
  7. 18 Feb, 2013 5 commits
  8. 15 Feb, 2013 2 commits
  9. 14 Feb, 2013 4 commits
    • Magali Ruffier's avatar
      added UniGene source for stickleback · f64a16f7
      Magali Ruffier authored
      removed source RefSeq_dna::gasterosteus_aculeatus
      it is a duplicate of RefSeq_dna::vertebrate-other
      
      removed ciona sources for JGI version
      it is a bad assembly which should not be referred to
      f64a16f7
    • Magali Ruffier's avatar
      when fetching children/parents/descendants/ancestors of a given term, will... · 3f48ea35
      Magali Ruffier authored
      when fetching children/parents/descendants/ancestors of a given term, will return only relations of the same ontology
      if ontology is specified, will return relations for that ontology
      
      added fetch_all_roots method
      returns all the root terms of the database
      if ontology is specified, returns all the roots for a given ontology
      a root is a term which has no parents within its ontology
      3f48ea35
    • Magali Ruffier's avatar
      added is_root flag to term table · 8624f08d
      Magali Ruffier authored
      a term is root if it has no parents within the ontology it is from
      
      added ontology_id row to closure and relation table
      a same relation can exist in two ontologies
      8624f08d
    • Magali Ruffier's avatar
      when loading OBO files, add is_root flag to terms which are root within the... · c0944d84
      Magali Ruffier authored
      when loading OBO files, add is_root flag to terms which are root within the OBO file loaded and part of the ontology
      add ontology information to relation and closure tables
      a relation's ontology is the ontology from which the relation was loaded from
      for example, a GO to GO relation is an EFO relation if it was loaded from the EFO obo file
      c0944d84
  10. 13 Feb, 2013 3 commits
  11. 12 Feb, 2013 4 commits