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  1. 08 Apr, 2009 1 commit
  2. 01 Apr, 2009 1 commit
  3. 25 Mar, 2009 1 commit
  4. 11 Mar, 2009 1 commit
  5. 03 Mar, 2009 2 commits
    • cvs2git's avatar
      This commit was manufactured by cvs2svn to create branch 'branch- · 9e0c1ff9
      cvs2git authored
      ensembl-53'.
      
      Sprout from master 2009-03-03 10:32:29 UTC Andreas Kusalananda Kähäri <ak4@sanger.ac.uk> 'Bug fix:'
      Delete:
          misc-scripts/protein_match/process_pmach.pl
      9e0c1ff9
    • Andreas Kusalananda Kähäri's avatar
      Bug fix: · 558c611f
      Andreas Kusalananda Kähäri authored
        Make sure that transcripts created by the adaptor has their
        'edits_enabled' set to true.  This ensures that post-translational
        modifications takes effect, crucially translating selenocysteines into
        'U' rather than into stop codons ('*').
      558c611f
  6. 25 Feb, 2009 2 commits
  7. 19 Feb, 2009 2 commits
  8. 18 Feb, 2009 1 commit
    • Andreas Kusalananda Kähäri's avatar
      Formatting of POD & code. · e72db1ec
      Andreas Kusalananda Kähäri authored
      Merging, with adaptions, of patch from Andy Yates:
      
        Changes to regular expressions for detecting multi-species databases,
        including multi-species compara and ancestral databases.
      
        Added method find_and_add_aliases() which in the future may be used to
        read species name aliases directly from the meta tables rather than
        having the species aliases hard-coded in this module.
      
      Tested with multi-species databases as well as with native Core
      databases.
      e72db1ec
  9. 17 Feb, 2009 1 commit
  10. 16 Feb, 2009 10 commits
  11. 11 Feb, 2009 2 commits
  12. 10 Feb, 2009 2 commits
  13. 09 Feb, 2009 1 commit
  14. 08 Feb, 2009 1 commit
  15. 05 Feb, 2009 5 commits
  16. 04 Feb, 2009 1 commit
  17. 03 Feb, 2009 4 commits
  18. 02 Feb, 2009 2 commits