This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git.
Pull mirroring updated .
- 19 Apr, 2011 2 commits
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cvs2git authored
ensemblgenomes-9-62'. Sprout from master 2011-04-19 12:20:57 UTC Monika Komorowska <mk8@sanger.ac.uk> 'Added procedure file parameter.' Delete: misc-scripts/protein_match/process_pmach.pl
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Monika Komorowska authored
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- 18 Apr, 2011 3 commits
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Monika Komorowska authored
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Monika Komorowska authored
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Ian Longden authored
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- 15 Apr, 2011 8 commits
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William McLaren authored
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Ian Longden authored
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Ian Longden authored
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Ian Longden authored
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Helder Pedro authored
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Helder Pedro authored
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Andy Yates authored
Test case addition to make sure we don't keep on iterating executing the transaction when its been successful
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Andy Yates authored
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- 14 Apr, 2011 7 commits
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Monika Komorowska authored
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Monika Komorowska authored
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Andy Yates authored
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Rhoda Kinsella authored
Added code to fix issue with Corf genes in zebrafish. The gene names were not being modified to look like hsC*orf*-like. This now works.
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Monika Komorowska authored
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Monika Komorowska authored
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Monika Komorowska authored
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- 13 Apr, 2011 1 commit
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Susan Fairley authored
Added an additional check in the transform method. When testing exons, if consecutive exons in the old version of the transcript were on the same strand then the new versions should be on the same strand too. If not, returns undef. Prevents cases being transformed where the transcript's exons map as below: 1 ------------------------------ -1 5 4 3 2 1 to 1 3 4 5 ------------------------------ -1 2 1
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- 11 Apr, 2011 16 commits
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Monika Komorowska authored
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Gautier Koscielny authored
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Monika Komorowska authored
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Monika Komorowska authored
Replace HGNC_ENSTParser.pm, GI_Vega_Parser.pm and ZFIN_DARTParser.pm parsers with VegaOfficialNameParser.pm
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Monika Komorowska authored
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Monika Komorowska authored
CV: ----------------------------------------------------------------------
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Monika Komorowska authored
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Monika Komorowska authored
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Monika Komorowska authored
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Ian Longden authored
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Ian Longden authored
changed the dumped databases entrys from int to enum so changed the values here to match those in the database
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Ian Longden authored
Add abillity to ignore a black list of genes for dumping. Also new methos to get a hash of the non reference alt_alleles
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Ian Longden authored
changed the dumped databases entrys form int to enum so changed the values here to match those in the database
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Ian Longden authored
New table alt_allele added and dumped in the xref table changed to an enum for ease of use/understabding
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Ian Longden authored
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Ian Longden authored
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- 08 Apr, 2011 2 commits
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Arnaud Kerhornou authored
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Glenn Proctor authored
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- 07 Apr, 2011 1 commit
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Glenn Proctor authored
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