Commits · d5c007fe2aaa89dc2146a074cfede6ac82347c95 · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Jul 01, 2022.

27 Apr, 2012 1 commit
- Do not quote identifiers if they are going into a prepared statement.... · d5c007fe
  Andy Yates authored Apr 27, 2012
```
Do not quote identifiers if they are going into a prepared statement. Otherwise we end up with odd results
```
  d5c007fe
26 Apr, 2012 2 commits
- Adding a test case mode for quickly generating sets of ensembl-test compatible dumps · 3cf86930
  Andy Yates authored Apr 26, 2012
  
  3cf86930
- Added link to AGP spec · 796d54e0
  Daniel Barrell authored Apr 26, 2012
  
  796d54e0
25 Apr, 2012 3 commits
- minor changes to regexes and layout · 227fe686
  Daniel Barrell authored Apr 25, 2012
  
  227fe686
- Now handles all component_type contigs which are not gaps · 7c94d80b
  Daniel Barrell authored Apr 25, 2012
  
  7c94d80b
- Added support for 'Active finishing' contigs. Removed hack for HG1211_PATCH... · 29f8c453
  Daniel Barrell authored Apr 25, 2012
```
Added support for 'Active finishing' contigs. Removed hack for HG1211_PATCH unknown orientation (although GRC have bot provided a solution as yet) BUT added in a new hack for contig FP700111.21 which had to be retrieved from SVA (current version is FP700111.23).
```
  29f8c453
23 Apr, 2012 1 commit
- Added support for SEE ALSO and further cleaned up code and text samples prior... · f99c5816
  Kieron Taylor authored Apr 23, 2012
```
Added support for SEE ALSO and further cleaned up code and text samples prior to doxygen processing.
```
  f99c5816
20 Apr, 2012 2 commits
- *** empty log message *** · f592a1fe
  Monika Komorowska authored Apr 20, 2012
  
  f592a1fe
- Allowing people to comment on web data · 8b6b2cb0
  Andy Yates authored Apr 20, 2012
  
  8b6b2cb0
19 Apr, 2012 1 commit
- Cleaned up overly escaped code examples. · 6e45cbeb
  Kieron Taylor authored Apr 19, 2012
  
  6e45cbeb
18 Apr, 2012 2 commits
- Really the user does not need to be able to do select into outfile. copy paste error · d2743a85
  Andy Yates authored Apr 18, 2012
  
  d2743a85
- Append accession number to the display label. · 15e78dcf
  Monika Komorowska authored Apr 18, 2012
```
JIRA ticket: http://www.ebi.ac.uk/panda/jira/browse/ENSCORESW-117
```
  15e78dcf
17 Apr, 2012 1 commit
- Do not do meta_coord calculations for the ditag table. · 8ed32b19
  Andreas Kusalananda Kähäri authored Apr 17, 2012
  
  8ed32b19
16 Apr, 2012 2 commits
- Added note about =head2 in DESCRIPTION section, and corrected a typo. · 3531f19b
  Kieron Taylor authored Apr 16, 2012
  
  3531f19b
- don't strip off the SSF prefix · 101e1369
  Monika Komorowska authored Apr 16, 2012
  
  101e1369
13 Apr, 2012 2 commits
- file format changed · c9f97ac6
  Monika Komorowska authored Apr 13, 2012
  
  c9f97ac6
- updated MIM2GENE source url · 5f387491
  Monika Komorowska authored Apr 13, 2012
  
  5f387491
11 Apr, 2012 6 commits
- store density features in batch · ca683575
  Monika Komorowska authored Apr 11, 2012
  
  ca683575
- store density features in batch · 5cd7ec3b
  Monika Komorowska authored Apr 11, 2012
  
  5cd7ec3b
- count only stored density features · 1fec175b
  Monika Komorowska authored Apr 11, 2012
  
  1fec175b
- count only density features which have been stored · cde48eb3
  Monika Komorowska authored Apr 11, 2012
  
  cde48eb3
- changed result title format as request by Paul/Dan S · 18a94c17
  Nick Langridge authored Apr 11, 2012
  
  18a94c17
- make sure dbs flagged as having variation positions changed have a variation db · 9cd98113
  Monika Komorowska authored Apr 11, 2012
  
  9cd98113
10 Apr, 2012 12 commits
- Removed problematic (!defined $release_file) test. · 0efe34de
  Derek Wilson authored Apr 10, 2012
  
  0efe34de
- Updates for VectorBase species · 6f5d29bb
  Derek Wilson authored Apr 10, 2012
  
  6f5d29bb
- extended memory limit for exonerate jobs · d28b985f
  Monika Komorowska authored Apr 10, 2012
  
  d28b985f
- added config for turkey · 16dc089e
  Monika Komorowska authored Apr 10, 2012
  
  16dc089e
- Setting small start to 0. This should be a safe thing to do looking at the currently logic usage. · d6247124
  Andy Yates authored Apr 10, 2012
  
  d6247124
- This is an Ensembl script; defaults should reflect this & not other team's defaults · 6cff9789
  Andy Yates authored Apr 10, 2012
  
  6cff9789
- added messages on how long each script takes to run on average · a171ed43
  Monika Komorowska authored Apr 10, 2012
  
  a171ed43
- copy user and password from the first host, add memory limit of 2Gb · fe22129b
  Monika Komorowska authored Apr 10, 2012
  
  fe22129b
- Added memory requirements and added the Nile tilapia to the projection species list. · 1e445dac
  Rhoda Kinsella authored Apr 10, 2012
  
  1e445dac
- printd()? · b12833ad
  Andreas Kusalananda Kähäri authored Apr 10, 2012
  
  b12833ad
- Taking out subgenus as well since this again was not part of the original · 7a1d54ea
  Andy Yates authored Apr 10, 2012
  
  7a1d54ea
- Exclude the subgroup and group to get closer to our original classification · f303c7d5
  Andy Yates authored Apr 10, 2012
  
  f303c7d5
05 Apr, 2012 5 commits
- Fix for trinomials · b5b32f42
  Andy Yates authored Apr 05, 2012
  
  b5b32f42
- Only remove tables which are bak and backup to avoid untintentional removal of... · e9327044
  Andy Yates authored Apr 05, 2012
```
Only remove tables which are bak and backup to avoid untintentional removal of temp tables like tmp_individual_genotype
```
  e9327044
- System name was not a core one · 98a42a30
  Andy Yates authored Apr 05, 2012
  
  98a42a30
- Allowing species as a rank · 6706df75
  Andy Yates authored Apr 05, 2012
  
  6706df75
- Setting up defaults · e00bdecc
  Andy Yates authored Apr 05, 2012
  
  e00bdecc