Commits · dc3f5ffff701dc69097e54ae79c6851cbc12abc7 · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Jan 27, 2023.

21 Dec, 2005 11 commits
- Modified with the code from the branch · dc3f5fff
  Daniel Rios authored Dec 21, 2005
  
  dc3f5fff
- Module to create more than 1 individualSlice · 7c7aee86
  Daniel Rios authored Dec 21, 2005
  
  7c7aee86
- Added Wormbase_locus and Uniprot/Varsplic, for updated C.elegans xref_mapping · 6c3d5095
  Bronwen Aken authored Dec 21, 2005
  
  6c3d5095
- Modules to map Indels · 2da0677c
  Daniel Rios authored Dec 21, 2005
  
  2da0677c
- Modified bug · 0c839c1e
  Daniel Rios authored Dec 21, 2005
  
  0c839c1e
- added locus/gene/trasncript fro direct xrefs · c2f6890a
  Ian Longden authored Dec 21, 2005
  
  c2f6890a
- Removed conflict indicator · 835eedea
  Daniel Rios authored Dec 21, 2005
  
  835eedea
- Merged with branch-normalized-alleles · 6538e871
  Daniel Rios authored Dec 21, 2005
  
  6538e871
- Removed conflict indicator · cd7a0d3b
  Daniel Rios authored Dec 21, 2005
  
  cd7a0d3b
- Merged with branch-normalized-alleles · 8dddf22e
  Daniel Rios authored Dec 21, 2005
  
  8dddf22e
- Merged from branch · 48677f61
  Daniel Rios authored Dec 21, 2005
  
  48677f61
20 Dec, 2005 2 commits
- worm fixes. Plus new wirmbase_locus added · 39ae9dec
  Ian Longden authored Dec 20, 2005
  
  39ae9dec
- Parser for Uniprot alternate splices. · f839ede4
  Glenn Proctor authored Dec 20, 2005
  
  f839ede4
19 Dec, 2005 5 commits
- GO xrefs hang off translations, not genes. · 823ebda6
  Glenn Proctor authored Dec 19, 2005
```
Also refactoring.
```
  823ebda6
- Start of patch.sql for release 37 · 47680c9e
  Glenn Proctor authored Dec 19, 2005
  
  47680c9e
- fixes bind_params in exists (DBEntryAdaptor) · 6655fa97
  Tim Hubbard authored Dec 19, 2005
  
  6655fa97
- uses SupportingFeatureAdaptor · 12a9b545
  Bronwen Aken authored Dec 19, 2005
  
  12a9b545
- Extended xref.display_label to 255 chars (from 40) to deal with "[from ..."... · 8669b099
  Glenn Proctor authored Dec 19, 2005
```
Extended xref.display_label to 255 chars (from 40) to deal with "[from ..." suffix for projected names.
```
  8669b099
17 Dec, 2005 1 commit

Added the "regulated_object_info" to enble access of the... · 3128d1b0

Will Spooner authored Dec 17, 2005

Added the "regulated_object_info" to enble access of the regulatory_feature_object.evidence and regulatory_feature_object.influence attributes.

3128d1b0

16 Dec, 2005 2 commits
- Update the pod documentation for sub get_all_homologous_Genes{ · 03e94f7f
  Abel Ureta-Vidal authored Dec 16, 2005
  
  03e94f7f
- · caa86aa2
  Laura Clarke authored Dec 16, 2005
```
change to api version
```
  caa86aa2
15 Dec, 2005 1 commit
- Added warning to fix the error message <Can't locate object method "warn" via... · 5e9c21d9
  Bronwen Aken authored Dec 15, 2005
```
 Added warning to fix the error message <Can't locate object method "warn" via package "Bio::EnsEMBL::Map::DBSQL::MarkerAdaptor">
```
  5e9c21d9
14 Dec, 2005 1 commit
- Updated schema version. · a1ee983e
  Glenn Proctor authored Dec 14, 2005
  
  a1ee983e
13 Dec, 2005 2 commits
- Extended store method to accept multiple ensObj relationships to the RegulatoryFeature · 96595f9f
  Will Spooner authored Dec 13, 2005
  
  96595f9f
- Bug fix: is_known() was returning true if the transcript had a display_xref... · 7f965a72
  Glenn Proctor authored Dec 13, 2005
```
Bug fix: is_known() was returning true if the transcript had a display_xref set, which is both incorrect and inconsitent with the is_known() method in Gene.pm. New behaviour is to return true if the transcript's status is KNOWN.
```
  7f965a72
12 Dec, 2005 2 commits
- worm fixes · 8e3b915a
  Ian Longden authored Dec 12, 2005
  
  8e3b915a
- commented out Time::HiRes · 863b803a
  Ian Longden authored Dec 12, 2005
  
  863b803a
09 Dec, 2005 3 commits
- celegans fine tuning · 6061e96b
  Ian Longden authored Dec 09, 2005
  
  6061e96b
- worm stuff · 1c658085
  Ian Longden authored Dec 09, 2005
  
  1c658085
- Changed Uniprot splice thing to UniProtKB/SpliceVariant · f42d66b7
  Glenn Proctor authored Dec 09, 2005
  
  f42d66b7
08 Dec, 2005 6 commits
- Added Uniprot/Varsplic for all species · c356d4ba
  Glenn Proctor authored Dec 08, 2005
  
  c356d4ba
- transform to go over gaps in introns · 485f10ef
  Arne Stabenau authored Dec 08, 2005
  
  485f10ef
- different comment · c98d74e2
  Arne Stabenau authored Dec 08, 2005
  
  c98d74e2
- gap transform test cases · 173904d1
  Arne Stabenau authored Dec 08, 2005
  
  173904d1
- corrected test data for gap map genes · cde367bf
  Arne Stabenau authored Dec 08, 2005
  
  cde367bf
- Change call to DBEntryAdaptor->store to take object, not ID · af0c08ae
  Glenn Proctor authored Dec 08, 2005
  
  af0c08ae
06 Dec, 2005 4 commits
- WB and ZFIN had end of line test after names hence always failed. This has now been fixed. · cce90a82
  Ian Longden authored Dec 06, 2005
  
  cce90a82
- Tidy up output. · ceb1374c
  Glenn Proctor authored Dec 06, 2005
  
  ceb1374c
- Added -notriage option to skip triage dumping. · 94855b9e
  Glenn Proctor authored Dec 06, 2005
  
  94855b9e
- Now set gene & transcript KNOWN/NOVEL status based on xrefs to external_dbs. · f2f4c5be
  Glenn Proctor authored Dec 06, 2005
```
Added -notriage option to skip triage dumping.
```
  f2f4c5be