Commits · dd06b4893744f22ca48331130cf409e93558559f · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Feb 02, 2023.

24 Sep, 2018 2 commits
- Updated the DB schema to version 95 · dd06b489
  Marek Szuba authored Sep 24, 2018
  
  dd06b489
- Updated API version to 95 · 970850af
  Marek Szuba authored Sep 24, 2018
  
  970850af
11 Sep, 2018 3 commits
- Merge pull request #295 from Ensembl/feature/parser_simplify · 2e25dcbc
  Magali Ruffier authored Sep 11, 2018
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ENSCORESW-2850: optimised for single species run
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  2e25dcbc
- ENSCORESW-2850 : update usage with all options · f5c96618
  Magali Ruffier authored Sep 11, 2018
  
  f5c96618
- Merge pull request #290 from Ensembl/feature/uniprot_dependent · 2214de9c
  Magali Ruffier authored Sep 11, 2018
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ENSCORESW-2837: do not import dependent VGNC
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  2214de9c
07 Sep, 2018 1 commit
- tidy up badly initialised values · 8293dad6
  Magali Ruffier authored Sep 07, 2018
  
  8293dad6
05 Sep, 2018 24 commits
- Merge pull request #294 from Ensembl/bugfix/reactome_species · 196f4513
  Kieron Taylor authored Sep 05, 2018
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ENSCORESW-2853: match Ensembl species names with underscores
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  196f4513
- Merge pull request #293 from Ensembl/feature/xref_config · 05b5a87d
  Kieron Taylor authored Sep 05, 2018
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Feature/xref config
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  05b5a87d
- ENSCORESW-2850 : optimised for single species run · 805432c6
  Magali Ruffier authored Sep 05, 2018
  
  805432c6
- ENSCORESW-2853 : match Ensembl species casing · ffacd1b1
  Magali Ruffier authored Sep 05, 2018
  
  ffacd1b1
- ENSCORESW-2805 : tidy up dependent sources · 77e32653
  Magali Ruffier authored Sep 05, 2018
  
  77e32653
- ENSCORESW-2805 : add default priority description · 9bbb4715
  Magali Ruffier authored Sep 05, 2018
  
  9bbb4715
- ENSCORESW-2805 : remove empty fields · 1388eb12
  Magali Ruffier authored Aug 31, 2018
  
  1388eb12
- ENSCORESW-2805 : remove aliases as not useful · 0d09a1a7
  Magali Ruffier authored Aug 31, 2018
  
  0d09a1a7
- ENSCORESW-2805 : re-order species by division · 96491a64
  Magali Ruffier authored Aug 31, 2018
  
  96491a64
- ENSCORESW-2805 : default sources for protists · 3a2da289
  Magali Ruffier authored Aug 31, 2018
  
  3a2da289
- ENSCORESW-2805 : remove leftover metazoa · 65f9bab1
  Magali Ruffier authored Aug 31, 2018
  
  65f9bab1
- ENSCORESW-2805 : default sources for plants · 376814f1
  Magali Ruffier authored Aug 31, 2018
  
  376814f1
- ENSCORESW-2805 : set default sources for fungi · f07b01e7
  Magali Ruffier authored Aug 31, 2018
  
  f07b01e7
- ENSCORESW-2805 : remove some unused sources · 23a12753
  Magali Ruffier authored Aug 31, 2018
  
  23a12753
- ENSCORESW-2805 : simplify RefSeq sources · 548b5c8d
  Magali Ruffier authored Aug 31, 2018
  
  548b5c8d
- ENSCORESW-2805 : cionas are considered vertebrates · 933e55fe
  Magali Ruffier authored Aug 31, 2018
  
  933e55fe
- ENSCORESW-2805 : set generic sources for metazoa · 98dcc546
  Magali Ruffier authored Aug 31, 2018
  
  98dcc546
- ENSCORESW-2805 : remove sources with local files · 7cc78354
  Magali Ruffier authored Aug 31, 2018
  
  7cc78354
- ENSCORESW-2805 : remove some unused sources · 2a85640f
  Magali Ruffier authored Aug 31, 2018
  
  2a85640f
- ENSCORESW-2805 : remove UniGene deprecated source · 03f60def
  Magali Ruffier authored Aug 31, 2018
  
  03f60def
- Merge pull request #292 from Ensembl/bugfix/refseq_coordinate · 170c0c41
  Kieron Taylor authored Sep 05, 2018
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ENSCORESW-2553: retrieve correct accession for peptides
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  170c0c41
- Merge pull request #291 from Ensembl/feature/ucsc_parser · ce124519
  Kieron Taylor authored Sep 05, 2018
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ENSCORESW-2792: one UCSC parser per species
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  ce124519
- ENSCORESW-2553 : retrieve correct accession for peptides · 84352fcf
  Magali Ruffier authored Sep 05, 2018
  
  84352fcf
- ENSCORESW-2792 : one UCSC parser per species · bbb4a973
  Magali Ruffier authored Sep 05, 2018
  
  bbb4a973
04 Sep, 2018 6 commits
- Merge pull request #288 from Ensembl/feature/ucsc_parser · 09f9c7bd
  Kieron Taylor authored Sep 04, 2018
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ENSCORESW-2792: separate mouse UCSC to avoid clashes
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  09f9c7bd
- Merge pull request #286 from wbazant/master · 2f39f152
  Kieron Taylor authored Sep 04, 2018
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Test module for xref parsers, test WormbaseDirectParser
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  2f39f152
- Merge pull request #289 from Ensembl/bugfix/cleanup_dependent · 096ddc34
  Kieron Taylor authored Sep 04, 2018
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ENSCORESW-2744: remove dependent_xref when removing master
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  096ddc34
- ENSCORESW-2837 : do not import dependent VGNC · 374bef64
  Magali Ruffier authored Sep 04, 2018
  
  374bef64
- ENSCORESW-2744 : remove dependent_xref when removing master · 667e4c42
  Magali Ruffier authored Sep 04, 2018
  
  667e4c42
- ENSCORESW-2792 : add documentation for future reference · 45632852
  Magali Ruffier authored Sep 04, 2018
  
  45632852
03 Sep, 2018 4 commits
- Merge pull request #287 from at7/var_tidyup_95 · 962bf859
  Kieron Taylor authored Sep 03, 2018
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Remove deprecated Variation methods
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  962bf859
- remove AlignStrainSlice · f528f3b6
  Anja Thormann authored Sep 03, 2018
  
  f528f3b6
- Remove AlignStrainSlice · ddc2c180
  Anja Thormann authored Sep 03, 2018
  
  ddc2c180
- XrefParser::Database uses DBConnection · 93ad6e79
  Wojtek Bazant authored Sep 03, 2018
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+ XrefParser::Database stores a DBConnection, setters delegate to it
+ New test database, for xrefs
+ Setup to test XrefParsers
+ Tests for WormbaseDirectParser
```
  93ad6e79