Commits · e462a834a4ab59bd3bc60a8bd98882dd3a23d5ab · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Jan 28, 2023.

17 Mar, 2006 1 commit
- split ensembl_location into 5 types to speed up the features retrieval · e462a834
  Eugene Kulesha authored Mar 17, 2006
  
  e462a834
03 Mar, 2006 1 commit
- get_all_SeqEdits now checks attributes to convert first amino acid to methionine · 00c9d484
  Sarah Dyer authored Mar 03, 2006
```
if 'initial_met'
```
  00c9d484
20 Oct, 2005 1 commit
- cached DAS features by SOURCE_URL/MAPPING_TYPE rather than by NAME · d4785cb8
  Eugene Kulesha authored Oct 20, 2005
  
  d4785cb8
17 Aug, 2005 1 commit
- only get seq if seq object is not null. If null return an empty string · 35a3dc05
  Ian Longden authored Aug 17, 2005
  
  35a3dc05
12 Aug, 2005 1 commit
- status reports added plus some tiding up of docs · d1b8f7f5
  Ian Longden authored Aug 12, 2005
  
  d1b8f7f5
12 Apr, 2005 2 commits
- Updated comment. · 2d4cca72
  Glenn Proctor authored Apr 12, 2005
  
  2d4cca72
- fetch_all_regulatory_features->get_all_regulatory_features · 37704387
  Glenn Proctor authored Apr 12, 2005
  
  37704387
24 Mar, 2005 1 commit
- Added fetch_all_regulatory_features() · 77990c6d
  Glenn Proctor authored Mar 24, 2005
  
  77990c6d
09 Mar, 2005 1 commit
- stop displaying DAS tracks for data objects without IDs · 46b2c141
  Eugene Kulesha authored Mar 09, 2005
  
  46b2c141
10 Feb, 2005 1 commit
- made get_all_DAS_Features return the source name · 7527ac37
  Eugene Kulesha authored Feb 10, 2005
  
  7527ac37
09 Feb, 2005 1 commit
- added get_all_DAS_Features that will get das features and annotations from all attached sources · df067b63
  Eugene Kulesha authored Feb 09, 2005
  
  df067b63
09 Dec, 2004 1 commit
- added support for created_date and modified_date in gene,exon,transcript and translation · cb382499
  Arne Stabenau authored Dec 09, 2004
  
  cb382499
19 Jul, 2004 1 commit
- removed warn · 20b8740b
  James Stalker authored Jul 19, 2004
  
  20b8740b
05 Jul, 2004 1 commit
- selenocystein -> selenocysteine · 61ba2837
  Graham McVicker authored Jul 05, 2004
  
  61ba2837
09 Jun, 2004 1 commit
- Removed unnecessary warning · d0789c26
  Graham McVicker authored Jun 09, 2004
  
  d0789c26
27 May, 2004 1 commit
- Added adaptor/dbID test to get_DBEntries call · 94514a1d
  Will Spooner authored May 27, 2004
  
  94514a1d
26 May, 2004 1 commit
- POD changes · e30e41d0
  Graham McVicker authored May 26, 2004
  
  e30e41d0
21 May, 2004 1 commit
- changed selenocystein implementation to use SeqEdits and be more consistant... · 3153564f
  Graham McVicker authored May 21, 2004
```
changed selenocystein implementation to use SeqEdits and be more consistant with Transcript implementatin
```
  3153564f
14 May, 2004 1 commit
- fix so that PredictionTranscript->translation->seq() works like normal Transcript · 356b6378
  Graham McVicker authored May 14, 2004
  
  356b6378
11 May, 2004 1 commit
- get_all_Attributes and selenocystein support · 0865dd2c
  Arne Stabenau authored May 11, 2004
  
  0865dd2c
24 Mar, 2004 1 commit
- Fixed DAS handling to key on name rather than DSN · bb4c041f
  Will Spooner authored Mar 24, 2004
  
  bb4c041f
17 Feb, 2004 1 commit
- add into get_all_DASFactories call for protdas · 5726d5c4
  Web Admin authored Feb 17, 2004
  
  5726d5c4
13 Jan, 2004 3 commits
- remove extra length function · 46f4b01d
  Web Admin authored Jan 13, 2004
  
  46f4b01d
- testing · 28e8a60d
  Web Admin authored Jan 13, 2004
  
  28e8a60d
- use CORE::length instead of length just to be safe · 0b10a7a3
  Graham McVicker authored Jan 13, 2004
  
  0b10a7a3
12 Jan, 2004 1 commit
- added seq() and length() methods · 29a1af03
  Graham McVicker authored Jan 12, 2004
  
  29a1af03
09 Jan, 2004 1 commit
- Merged in the new-seqstore into HEAD version · fc6ced68
  Arne Stabenau authored Jan 09, 2004
  
  fc6ced68
29 Aug, 2003 1 commit
- changed Gene so that $gene->adaptor(undef) removes adaptor · 8b406953
  James Gilbert authored Aug 29, 2003
  
  8b406953
11 Jun, 2003 2 commits
- get_all_DBEntries should return [] instead of undef if there are no xrefs · 39664ac0
  Graham McVicker authored Jun 11, 2003
  
  39664ac0
- added get_all_DBEntries methods, changed get_all_DBLinks implementation to reflect DBEntry changes · b6c11600
  Graham McVicker authored Jun 11, 2003
  
  b6c11600
10 Jun, 2003 1 commit
- added get_all_DBLinks method · e6167b5b
  Stephen Keenan authored Jun 10, 2003
  
  e6167b5b
12 Feb, 2003 1 commit

· 82899b0d

Laura Clarke authored Feb 12, 2003

altered sub version so it doesn't not set the value for no good reason

82899b0d

10 Dec, 2002 1 commit
- tidied constructor · 5f1436eb
  Graham McVicker authored Dec 10, 2002
  
  5f1436eb
25 Nov, 2002 1 commit
- updated PODs, remove deprecated methods · cb9da477
  Graham McVicker authored Nov 25, 2002
  
  cb9da477
30 Oct, 2002 1 commit
- changed hash dereferencing · bb83b08b
  Arne Stabenau authored Oct 30, 2002
  
  bb83b08b
17 Oct, 2002 1 commit
- Warning typo fixed · a1084192
  Arne Stabenau authored Oct 17, 2002
  
  a1084192
16 Oct, 2002 2 commits

· 47491ad3

Laura Clarke authored Oct 16, 2002

Translation and TranslationAdaptor start_exon and end_exon to start_Exon and end_Exon

DBEntryAdaptor check to see if gene has a stable id before trying to used it to get info

47491ad3

lists -> listrefs · cb9c682b
Graham McVicker authored Oct 16, 2002

cb9c682b

23 Jul, 2002 1 commit
- Added Gene caching to improve slice performance (can still be improved more);... · 9cf11e42
  Graham McVicker authored Jul 23, 2002
```
Added Gene caching to improve slice performance (can still be improved more); Fixes to gene creation from lite database
```
  9cf11e42
10 Jul, 2002 1 commit
- small adjustments to Gene,Translation, Transcript · d068e792
  Arne Stabenau authored Jul 10, 2002
  
  d068e792