This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated .
  1. 18 Oct, 2002 1 commit
  2. 17 Oct, 2002 1 commit
    • Michele Clamp's avatar
      BaseAlignFeature - checks for defined percent_id · 338e7d8b
      Michele Clamp authored
      Exon - checks phase is defined before comparison
      PredictionTranscript - checks phase is defined.  Commented out LOG print statements
      TranscriptFactory - start_exon end_exon same old thang
      ExonAdaptor - hmm.
      338e7d8b
  3. 16 Oct, 2002 1 commit
  4. 15 Oct, 2002 2 commits
  5. 14 Oct, 2002 1 commit
  6. 09 Oct, 2002 1 commit
  7. 08 Oct, 2002 1 commit
  8. 07 Oct, 2002 2 commits
  9. 27 Sep, 2002 1 commit
  10. 26 Sep, 2002 1 commit
  11. 25 Sep, 2002 2 commits
  12. 24 Sep, 2002 2 commits
  13. 20 Sep, 2002 1 commit
  14. 19 Sep, 2002 1 commit
    • Graham McVicker's avatar
      Improved speed of feature retrieval by: · 1b0e7c46
      Graham McVicker authored
      -'Flatening' FeaturePair object so that it no longer contains 2 SeqFeatures; It is now isa SeqFeature with some additional Hit attributes (object still bhaves as if it contained two features
      -Adding 'fast' constructors to DnaDnaAlignFeatures and PepDnaAlignFeatures
      -Some other minor tweaks such as using bind columns instead of fetchrow_hashref
      1b0e7c46
  15. 05 Sep, 2002 1 commit
  16. 03 Sep, 2002 1 commit
    • Laura Clarke's avatar
      · 579b3f29
      Laura Clarke authored
      transform functionality in BaseAlignFeature should now work for slice -> raw contig other way still need implementing should also now split cigarlines nice where necessary
      
      made sure end_phase was set explicitly when transforming sticky exons in Exon.pm
      579b3f29
  17. 02 Sep, 2002 3 commits
  18. 30 Aug, 2002 2 commits
  19. 28 Aug, 2002 1 commit
  20. 19 Aug, 2002 1 commit
    • Laura Clarke's avatar
      · 8b109078
      Laura Clarke authored
      AssemblyMapper, altereed checking of seq->start to allow for negative numbers
      
      AlignFeatures, added coordinate transforms, only slice->rawcontig implemented currently plus otehr methods to make new supportting feature storage work like dbID and contig
      
      Exon, altered supporting feature storage
      
      FeaturePair remove cigar accessor as it is just confusing!
      8b109078
  21. 19 Jul, 2002 1 commit
  22. 08 Jul, 2002 1 commit
  23. 05 Jul, 2002 1 commit
  24. 16 Apr, 2002 1 commit
  25. 11 Apr, 2002 1 commit
  26. 26 Mar, 2002 1 commit
  27. 22 Mar, 2002 1 commit
  28. 11 Mar, 2002 1 commit
  29. 18 Feb, 2002 1 commit