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Check that an analysis exists before calling logic_name on it, needed for testing where a full object might not exist. And just good sanity.

- Fix how UTRs are created, they should be created with start/end relative to the feature, not in genomic coordinates
- Update tests to check UTRs are created correctly when transcripts are fetched from a Slice
- UTR test cases for forward and reverse strand transcripts

This reverts commit 3e24194c.

Fix for ENSCORESW-1816, bioperl's inconsistent handling of incomplete codons across versions. Trim any partial codons when translating unless told not to.

stable_id_version setter/getter for core object types, sets stable_id with a . delimited version or fetches stable_id with .version concatonated (if version is set)

if set, does not copy supporting_features between exons, resulting in a loss of information but speed up when storing numerous genes

corrected url for codon table

returns exon rank relative to an input transcript

if specified, will return sequence with lower cased UTRs