Commits · efb8bf9ea886708155098b21bc640a2e75a57641 · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Aug 12, 2022.

07 Feb, 2001 1 commit
- New script to deal with the mapping · efb8bf9e
  Emmanuel Mongin authored Feb 07, 2001
  
  efb8bf9e
06 Feb, 2001 5 commits
- Further DBOLD modification · 8b01156b
  Elia Stupka authored Feb 06, 2001
  
  8b01156b
- Changed all DBSQL to DBOLD in code · b58ad16c
  Elia Stupka authored Feb 06, 2001
  
  b58ad16c
- Re-instating usable DBOLD directory, which contains all adaptors from branch-06 · c72c775d
  Elia Stupka authored Feb 06, 2001
  
  c72c775d
- Adding to main trunk script for running crossmatches between clones · 397d97fd
  Elia Stupka authored Feb 06, 2001
  
  397d97fd
- changed id to internal id in get_Ensembl_SeqFeatures_contig to be compatible · 825bda3d
  Arek Icrapzych authored Feb 06, 2001
```
with mouse db
```
  825bda3d
05 Feb, 2001 3 commits
- Some small important changes... · 7530dd53
  Emmanuel Mongin authored Feb 05, 2001
  
  7530dd53
- fixed EMBLLOAD to work; commited tests against EMBLLOAD · 68f0ec46
  Ewan Birney authored Feb 05, 2001
  
  68f0ec46
- Script to postprocess pmatch, needs doc... · d5ad4a4a
  Emmanuel Mongin authored Feb 05, 2001
  
  d5ad4a4a
04 Feb, 2001 2 commits
- add the karyotype table! · 8ae2a613
  Ewan Birney authored Feb 04, 2001
  
  8ae2a613
- added Karyotype calls and support on virtual contigs; fixed newgene test to... · 84902135
  Ewan Birney authored Feb 04, 2001
```
added Karyotype calls and support on virtual contigs; fixed newgene test to skip due to supporting evidence change (need to discuss); still alot of "noise" on make test, but all tests do pass
```
  84902135
02 Feb, 2001 21 commits
- got rid of shadowing 'my'; · c1adbcda
  Philip Lijnzaad authored Feb 02, 2001
  
  c1adbcda
- *** empty log message *** · 48c4414e
  Philip Lijnzaad authored Feb 02, 2001
  
  48c4414e
- silenced warning · a83903e3
  Philip Lijnzaad authored Feb 02, 2001
  
  a83903e3
- *** empty log message *** · 60b9db44
  Philip Lijnzaad authored Feb 02, 2001
  
  60b9db44
- gene write bug for stickies fixed (by Ewan); lots of warnings silenced. · 62e06e99
  Philip Lijnzaad authored Feb 02, 2001
  
  62e06e99
- no more print STDERRs · f9f0dd1f
  Philip Lijnzaad authored Feb 02, 2001
  
  f9f0dd1f
- rewrite (by Ewan :-) of most of the _gene_query method. This time, it does · e5dc153e
  Philip Lijnzaad authored Feb 02, 2001
```
the rigth thing with walking a StickyExon's components.
```
  e5dc153e
- docu · ba2e7a54
  Philip Lijnzaad authored Feb 02, 2001
  
  ba2e7a54
- test now ready, and being passed. · 83096602
  Philip Lijnzaad authored Feb 02, 2001
  
  83096602
- added pause function; by calling it, you the name of the database is printed · 1620bfd6
  Philip Lijnzaad authored Feb 02, 2001
```
to stderr, which you can then cut-n-paste into another window for doing some
mysql stuff interactively.
```
  1620bfd6
- added sub id, convenience function to return the id of the underlying real · ae661a14
  Philip Lijnzaad authored Feb 02, 2001
```
gene
```
  ae661a14
- another typo, sorry · 79bf861f
  Arne Stabenau authored Feb 02, 2001
  
  79bf861f
- typo in query corrected. · 3025d875
  Arne Stabenau authored Feb 02, 2001
  
  3025d875
- removed _gp_position · a5387533
  Philip Lijnzaad authored Feb 02, 2001
  
  a5387533
- applied changes on branch since Dec 1 · 1088c62b
  Philip Lijnzaad authored Feb 02, 2001
  
  1088c62b
- applied changes on branch since Dec 1 · efefe18f
  Philip Lijnzaad authored Feb 02, 2001
  
  efefe18f
- applied changes on branch since Dec 1 · c82aa98e
  Philip Lijnzaad authored Feb 02, 2001
  
  c82aa98e
- applied changes on branch since Dec 1. This includes removing · 2302fd41
  Philip Lijnzaad authored Feb 02, 2001
```
the get_repeatmasked_sequence stuff, which is now in DB/ContigI.
```
  2302fd41
- applied changes on branch since Dec 1 · a485ce35
  Philip Lijnzaad authored Feb 02, 2001
  
  a485ce35
- propagated fixes from the branch · a1dba2aa
  Arek Icrapzych authored Feb 02, 2001
  
  a1dba2aa
- applied changes on branch since Dec 1 · e21325ee
  Philip Lijnzaad authored Feb 02, 2001
  
  e21325ee
01 Feb, 2001 8 commits
- applied changes on branch since Dec 1. · b989c275
  Philip Lijnzaad authored Feb 01, 2001
```
This may not work; not tested!
```
  b989c275
- applied changes on branch since Dec 1 · 515e9d65
  Philip Lijnzaad authored Feb 01, 2001
  
  515e9d65
- incorporated changes from branch since Dec 1st · 19e52c55
  Philip Lijnzaad authored Feb 01, 2001
  
  19e52c55
- comments/formating · e7ade108
  Philip Lijnzaad authored Feb 01, 2001
  
  e7ade108
- added gene name function · 221b8351
  Arne Stabenau authored Feb 01, 2001
  
  221b8351
- Debug · e2ba2e83
  Ensembl Pipeline authored Feb 01, 2001
  
  e2ba2e83
- Feature_Obj now returns feature pairs · c328161c
  Ensembl Pipeline authored Feb 01, 2001
```
RawContig doesn't barf at sequence versions of 0
```
  c328161c
- Changed sql in convert_fpc_to_chromosome for fpc contigs that don't · b3ab83ca
  Ensembl Pipeline authored Feb 01, 2001
```
start at 1
```
  b3ab83ca