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  1. 19 Oct, 2011 1 commit
  2. 04 May, 2010 3 commits
  3. 22 Apr, 2010 3 commits
    • Andreas Kusalananda Kähäri's avatar
      In get_all_alternative_translations(): · 755ce7c3
      Andreas Kusalananda Kähäri authored
        We know that fetch_all_by_Transcript() (on a TranslationAdaptor) will
        return a list of translations, where the first one will always be the
        canonical translation (if there is one).  Make use of this fact to
        make the routine slightly quicker.
      755ce7c3
    • Andreas Kusalananda Kähäri's avatar
      In store(): · f8abbac7
      Andreas Kusalananda Kähäri authored
        * Use fetch_all_by_Transcript() rather than translation() on the
          transcript to get the canonical translation (and any alternative
          translations).
      
        * ... then store the translation and any alternative translations.
      
      Solves a problem stopping genebuilders from copying genes from one
      database to another.
      f8abbac7
    • Andreas Kusalananda Kähäri's avatar
      In fetch_all_by_Transcript(): · a74758df
      Andreas Kusalananda Kähäri authored
        * Correct documentation.
        * Use fetch_by_Transcript() to get canonical translation.
        * Modify SQL not to get canonical translation.
      a74758df
  4. 21 Apr, 2010 1 commit
  5. 20 Apr, 2010 3 commits
  6. 14 Apr, 2010 1 commit
  7. 01 Apr, 2010 1 commit
  8. 31 Mar, 2010 1 commit
  9. 30 Mar, 2010 1 commit
  10. 29 Mar, 2010 2 commits
    • Andreas Kusalananda Kähäri's avatar
      Modify store() so that it also stores the alternative translations · 29c4a475
      Andreas Kusalananda Kähäri authored
      associated with the transcript.
      29c4a475
    • Andreas Kusalananda Kähäri's avatar
      Added method get_all_alternative_translations(): · a729a87b
      Andreas Kusalananda Kähäri authored
        Args       : None
        Example    :
      
          my @alt_translations =
            @{ $transcript->get_all_alternative_translations() };
      
        Description:  Fetches all alternative translations defined for this
                      transcript.  The canonical translation is not returned.
      
        Returntype : Array reference to Bio::EnsEMBL::Translation
        Exceptions : None
        Caller     : General
        Status     : Stable
      
      
      Added method add_alternative_translation():
      
        Args       : Bio::EnsEMBL::Translation $translation
        Example    :
      
          $transcript->add_alternative_translation($translation);
      
        Description: Adds an alternative translation to this transcript.
        Returntype : None
        Exceptions : None
        Caller     : General
        Status     : Stable
      a729a87b
  11. 22 Mar, 2010 1 commit
  12. 17 Mar, 2010 1 commit
  13. 16 Mar, 2010 2 commits
  14. 12 Mar, 2010 2 commits
  15. 10 Mar, 2010 1 commit
  16. 05 Mar, 2010 2 commits
  17. 03 Mar, 2010 1 commit
  18. 01 Mar, 2010 2 commits
  19. 25 Feb, 2010 10 commits
  20. 24 Feb, 2010 1 commit