This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated .
  1. 09 Jan, 2004 1 commit
  2. 17 Jul, 2003 1 commit
  3. 19 Mar, 2003 1 commit
  4. 28 Jan, 2003 1 commit
  5. 16 Jan, 2003 1 commit
  6. 03 Jan, 2003 1 commit
  7. 18 Oct, 2002 1 commit
  8. 17 Oct, 2002 1 commit
  9. 11 Oct, 2002 1 commit
  10. 07 Oct, 2002 1 commit
  11. 03 Oct, 2002 1 commit
  12. 01 Oct, 2002 2 commits
  13. 26 Sep, 2002 1 commit
  14. 23 Sep, 2002 1 commit
  15. 19 Sep, 2002 1 commit
    • Graham McVicker's avatar
      Improved speed of feature retrieval by: · 1b0e7c46
      Graham McVicker authored
      -'Flatening' FeaturePair object so that it no longer contains 2 SeqFeatures; It is now isa SeqFeature with some additional Hit attributes (object still bhaves as if it contained two features
      -Adding 'fast' constructors to DnaDnaAlignFeatures and PepDnaAlignFeatures
      -Some other minor tweaks such as using bind columns instead of fetchrow_hashref
      1b0e7c46
  16. 12 Sep, 2002 1 commit
  17. 11 Sep, 2002 2 commits
  18. 29 Aug, 2002 1 commit
    • Graham McVicker's avatar
      more Pods · a0e51901
      Graham McVicker authored
      and Updated DBConnection so that get_adaptor no longer checks the object type of adaptors
      a0e51901
  19. 21 Aug, 2002 1 commit
  20. 19 Aug, 2002 2 commits
  21. 09 Aug, 2002 1 commit
  22. 29 Jul, 2002 1 commit
  23. 25 Jul, 2002 1 commit
  24. 23 Jul, 2002 1 commit
  25. 12 Jul, 2002 1 commit
  26. 19 Jun, 2002 1 commit
  27. 01 May, 2002 1 commit
    • Laura Clarke's avatar
      AnalysisAdaptor - logic_name must be unique so fetch_by_logic_name now only... · 4fbe162b
      Laura Clarke authored
      AnalysisAdaptor - logic_name must be unique so fetch_by_logic_name now only returns one analysis object
      DnaAlignFeatureAdaptor - formatting print statements etc
      ProteinAlignFeatureAdaptor - Now follows the same format as DnaAlignFeatureAdaptor, has methods to fetch by contig, slice and assembly location and when constrainted by score
      or percent id all methods can take an optional type which is logic name
      RepeatFeatureAdaptor
      PredictionTranscriptAdaptor all have methods which fetch by slice, contig_id and assembly location and each method has optional type which should be logic_name
      SimpleFeatureAdaptor
      4fbe162b
  28. 29 Apr, 2002 1 commit
  29. 25 Apr, 2002 2 commits
  30. 18 Apr, 2002 1 commit
  31. 17 Apr, 2002 1 commit
  32. 16 Apr, 2002 1 commit
  33. 11 Apr, 2002 1 commit
  34. 10 Apr, 2002 1 commit
  35. 03 Apr, 2002 1 commit
    • Laura Clarke's avatar
      added methods to both, first methods which will get features out of the appropriate table · 02c5a24d
      Laura Clarke authored
      by logic_name and by db name
      then methods have been written which use each of the fetch by methods but instead of returning a single feature pair or an
      array of feature  pair each one representing one line in the table and containing a cigar string they return an array of feature pairs where
      each part of the gapped alignment is repesented by one feature pair in old schema style
      02c5a24d
  36. 26 Mar, 2002 1 commit