GitLab

CCDS models from a DB instead of checking CCDS xrefs.

Also updated print statements

term.

# Demo program for the Ensembl ontology database and API.
#
# This program fetches a set of ontology terms by name and displays them
# on the console.
#-----------------------------------------------------------------------

Modified to deal with alt_scaffold_placement.txt ori=b, to process the files from GRC (skipping previously loaded patches) and load the patches into the supercontig level of the assembly (as well as chromosome and contig) along with the chrom-supercontig and supercontig-chrom mappings.

Slight changes to output.

OntologyTermAdaptor::fetch_by_name().

Make fetch_by_name() take an optional second argument (ontology name).

Make fetch_by_name() also look at synonyms.

Also only get term definitions from within "...".

We assume we're running on fresh database.