Commits · fdb511c865c8fe88e633b82dc5242438c3bfda42 · ensembl-gh-mirror / ensembl · GitLab

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring updated Feb 06, 2023.

16 Jan, 2004 5 commits
- corrected arithmetic error in fetch_all pointed out by vivek · fdb511c8
  Graham McVicker authored Jan 16, 2004
  
  fdb511c8
- Deleted default query and target files. · 9e824608
  Andreas Kusalananda Kähäri authored Jan 16, 2004
  
  9e824608
- lots of minor POD touchups · 1c7ff2eb
  Graham McVicker authored Jan 16, 2004
  
  1c7ff2eb
- POD updates · 6c9f5d0f
  Graham McVicker authored Jan 16, 2004
  
  6c9f5d0f
- seq_region_start|end could have returned undef inappropraitely when one (but... · f3591508
  Graham McVicker authored Jan 16, 2004
```
seq_region_start|end could have returned undef inappropraitely when one (but not both) of the features end|start was undefined
```
  f3591508
15 Jan, 2004 9 commits
- yet to be written for new API, removed b/c misleading · 8b636940
  Graham McVicker authored Jan 15, 2004
  
  8b636940
- updated for new api · 7213533f
  Graham McVicker authored Jan 15, 2004
  
  7213533f
- out of date, and too many file formats to maintain · e46ef466
  Graham McVicker authored Jan 15, 2004
  
  e46ef466
- very out of date and better described elsewhere · 98528daa
  Graham McVicker authored Jan 15, 2004
  
  98528daa
- added seq_region_* convenience methods · 19496b77
  Graham McVicker authored Jan 15, 2004
  
  19496b77
- added tests for new Feature seq_region_* methods · a20377c1
  Graham McVicker authored Jan 15, 2004
  
  a20377c1
- fixed test · ee9ea837
  Graham McVicker authored Jan 15, 2004
  
  ee9ea837
- turned off verbosity · 0f22c40b
  Graham McVicker authored Jan 15, 2004
  
  0f22c40b
- fixed test · afea057b
  Graham McVicker authored Jan 15, 2004
  
  afea057b
14 Jan, 2004 7 commits
- modified call to genomic2cdna in get_all_cdna_SNPs b/c slice arg should no longer be necessary · d1430a51
  Graham McVicker authored Jan 14, 2004
  
  d1430a51
- copy the name and type of the mapfrags which are converted to misc_features · 65fdbccf
  Graham McVicker authored Jan 14, 2004
  
  65fdbccf
- perform fuzzy matching of seq_region versions if no exact matching seq_region is found · 47ff4b54
  Graham McVicker authored Jan 14, 2004
  
  47ff4b54
- added tests for fuzzy-matching of seq_region versions · 6b51d267
  Graham McVicker authored Jan 14, 2004
  
  6b51d267
- Updated it not to use anymore /tmp for temporary copy and knows now about the... · fbd6245d
  Abel Ureta-Vidal authored Jan 14, 2004
```
Updated it not to use anymore /tmp for temporary copy and knows now about the mysql new directory configuration standards
```
  fbd6245d
- made some caches larger, and made caching in fetch_all more intelligent · a6b0996d
  Graham McVicker authored Jan 14, 2004
  
  a6b0996d
- Now works with ecs4 nodes and need port number in the input file · d62e480d
  Abel Ureta-Vidal authored Jan 14, 2004
  
  d62e480d
13 Jan, 2004 11 commits
- remove extra length function · 46f4b01d
  Web Admin authored Jan 13, 2004
  
  46f4b01d
- changes and new tests for new slice attribute seq_region_length · 118cc245
  Graham McVicker authored Jan 13, 2004
  
  118cc245
- turned off verbosity · 69d290df
  Graham McVicker authored Jan 13, 2004
  
  69d290df
- give more detail when warning · 78db673a
  Graham McVicker authored Jan 13, 2004
  
  78db673a
- Changes so seq_region_length is set when creating slices · 71d0bfd5
  Graham McVicker authored Jan 13, 2004
  
  71d0bfd5
- Added seq_region_length attribute · 40145c7d
  Graham McVicker authored Jan 13, 2004
  
  40145c7d
- return empty list instead of throwing in get_all_translateable_Exons when there is no Translation · a5d38a9b
  Graham McVicker authored Jan 13, 2004
  
  a5d38a9b
- changed POD to reflect new seq_region_length attrib · 55098c4f
  Graham McVicker authored Jan 13, 2004
  
  55098c4f
- add some calc stuff · 9d3d3eaa
  Web Admin authored Jan 13, 2004
  
  9d3d3eaa
- testing · 28e8a60d
  Web Admin authored Jan 13, 2004
  
  28e8a60d
- use CORE::length instead of length just to be safe · 0b10a7a3
  Graham McVicker authored Jan 13, 2004
  
  0b10a7a3
12 Jan, 2004 8 commits
- avoid a perl warning · 1d750c76
  Graham McVicker authored Jan 12, 2004
  
  1d750c76
- avoid a couple of warnings · 55af15f8
  Graham McVicker authored Jan 12, 2004
  
  55af15f8
- disabled the modification of Briggsae chromosome names. For now they keep the cbr25. prefix · 800d0695
  Graham McVicker authored Jan 12, 2004
  
  800d0695
- added option for database port · cfb40b5c
  Graham McVicker authored Jan 12, 2004
  
  cfb40b5c
- changed check for ProxyGeneAdaptor · 4e556996
  Graham McVicker authored Jan 12, 2004
  
  4e556996
- Disabled ProxyGene adaptor for now · 62c7422f
  Graham McVicker authored Jan 12, 2004
  
  62c7422f
- added seq() and length() methods · 29a1af03
  Graham McVicker authored Jan 12, 2004
  
  29a1af03
- added tests for length() and seq() methods added to Translation · d21bfe3e
  Graham McVicker authored Jan 12, 2004
  
  d21bfe3e