This project is mirrored from https://github.com/Ensembl/ensembl.git. Pull mirroring updated .
  1. 16 Dec, 2020 2 commits
  2. 04 Dec, 2020 1 commit
  3. 02 Dec, 2020 2 commits
  4. 30 Nov, 2020 1 commit
  5. 20 Nov, 2020 3 commits
  6. 19 Nov, 2020 2 commits
  7. 18 Nov, 2020 2 commits
  8. 17 Nov, 2020 3 commits
  9. 16 Nov, 2020 1 commit
    • nwillhoft's avatar
      ENSCORESW-3589: Add private subroutine create_chromosome_alias (#532) · 5d88d181
      nwillhoft authored
      * Add method to create chromosome alias
      
      Add method to create a 'chromosome' when no such coordinate system exists. Add to only fetch_by_name subroutine for now.
      
      * Revert "Add method to create chromosome alias"
      
      This reverts commit b7da8150.
      
      * Add method to create chromosome alias, also saves a karyotype-related cache.
      
      * Make new method private
      
      * Test that a chromosome CoordSystem object does not exist before alias is created
      
      * Remove debug statement from tests
      
      * Remove print/debug comments
      
      * Test sliceAdaptor object is created ok from Parus major test db
      
      * If multiple coordSystem candidates to alias, choose one with best rank
      
      * Add hypothetical test of multiple coordSystems that could be aliased. Add related checks to SliceAdaptor.
      
      * Fix typo in subroutine header text
      
      * Test alias is created correctly. Reformat alias tests to define them more clearly.
      5d88d181
  10. 11 Nov, 2020 1 commit
  11. 10 Nov, 2020 1 commit
  12. 09 Nov, 2020 1 commit
    • nwillhoft's avatar
      ENSCORESW-3588: Patch schema version in Parus major test db (#535) · 54e18f68
      nwillhoft authored
      * Patch schema version from 101 to 104 in Parus major test db
      
      * Revert "Patch schema version from 101 to 104 in Parus major test db"
      
      This reverts commit d8ad3a6d.
      
      * Update db dump files to schema version 104
      
      * Remove column headers. Convert NULL to \N
      
      * Revert changes to select db dump text files
      
      * Check Parus major test database connection
      
      * Move Parus major DBAdaptor test to a more appropriate test file
      
      * Remove extra line
      54e18f68
  13. 04 Nov, 2020 1 commit
  14. 30 Oct, 2020 1 commit
  15. 29 Oct, 2020 4 commits
  16. 27 Oct, 2020 2 commits
  17. 26 Oct, 2020 4 commits
  18. 23 Oct, 2020 2 commits
  19. 22 Oct, 2020 1 commit
  20. 21 Oct, 2020 2 commits
  21. 20 Oct, 2020 3 commits