# $Id$ ########################################################################## # SOURCES # # # # Keys: # # name - name of this source (required) # # download - must be downloaded (Y or N, required) # # order - parsing order for this source # # priority - priority of these data files when more files belong # # to the same source 'name' # # prio_descr - label for the 'priority' # # parser - the parser to be used (required) # # release_uri - URI pointing to release information (optional) # # data_uri - URI pointing to the data files (multiple, required) # # dependent_on - Comma separated list of sources which must be loaded # # first. # # Note that if species does not have xrefs from a # # master source specified in this list than the # # dependency is ignored # # # ########################################################################## [source EC_NUMBER::saccharomyces_cerevisiae] # Used by S.cerevisiae name = EC_NUMBER download = N order = 50 priority = 70 prio_descr = parser = release_uri = data_uri = [source AFFY_DrosGenome1::drosophila_melanogaster] # Used by drosophila_melanogaster name = AFFY_DrosGenome1 download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source BDGP_insitu_expr::drosophila_melanogaster] # Used by drosophila_melanogaster name = BDGP_insitu_expr download = N order = 50 priority = 1 prio_descr = BDGP in situ gene expression parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source BioGRID::drosophila_melanogaster] # Used by drosophila_melanogaster name = BioGRID download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source DEDb::drosophila_melanogaster] # Used by drosophila_melanogaster name = DEDb download = N order = 50 priority = 1 prio_descr = Drosophila melanogaster Exon DataBase parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source EPD::drosophila_melanogaster] # Used by the 12 drosophila genomes name = EPD download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source EPD::drosophila_pseudoobscura] # Used by the 12 drosophila genomes name = EPD download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_pseudoobscura/current/gff/dpse-all-r2.29.gff.gz [source EPD::drosophila_simulans] # Used by the 12 drosophila genomes name = EPD download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.org/genomes/dsim/current/gff/dsim-all-r1.4.gff.gz [source EPD::drosophila_sechellia] # Used by the 12 drosophila genomes name = EPD download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.org/releases/current/dsec_r1.3/gff/dsec-all-r1.3.gff.gz [source EPD::drosophila_mojavensis] # Used by the 12 drosophila genomes name = EPD download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.org/releases/current/dmoj_r1.3/gff/dmoj-all-r1.3.gff.gz [source EPD::drosophila_virilis] # Used by the 12 drosophila genomes name = EPD download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.org/releases/current/dvir_r1.2/gff/dvir-all-r1.2.gff.gz [source FlyAtlas::drosophila_melanogaster] # Used by drosophila_melanogaster name = FlyAtlas download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source FlyAtlas::drosophila_pseudoobscura] # Used by drosophila_pseudoobscura name = FlyAtlas download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_pseudoobscura/current/gff/dpse-all-r2.29.gff.gz [source FlyExpress::drosophila_melanogaster] # Used by drosophila_melanogaster name = FlyExpress download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source FlyReactome::drosophila_melanogaster] # Used by drosophila_melanogaster name = FlyReactome download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source GenomeRNAi::drosophila_melanogaster] # Used by drosophila_melanogaster name = GenomeRNAi download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source InteractiveFly::drosophila_melanogaster] # Used by drosophila_melanogaster name = InteractiveFly download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source MEROPS::drosophila_melanogaster] # Used by the 12 drosophila genomes name = MEROPS download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source MEROPS::drosophila_grimshawi] # Used by the 12 drosophila genomes name = MEROPS download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_grimshawi/current/gff/dgri-all-*.gff.gz [source MEROPS::drosophila_erecta] # Used by the 12 drosophila genomes name = MEROPS download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.org/releases/current/dere_1.3/gff/dere-all-r1.3.gff.gz [source MEROPS::drosophila_virilis] # Used by the 12 drosophila genomes name = MEROPS download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.org/releases/current/dvir_1.2/gff/dvir-all-r1.2.gff.gz [source miRBase::drosophila_melanogaster] # Used by the 12 drosophila genomes name = miRBase download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source miRBase::drosophila_pseudoobscura] # Used by the 12 drosophila genomes name = miRBase download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_pseudoobscura/current/gff/dpse-all-r2.29.gff.gz [source MitoDrome::drosophila_melanogaster] # Used by drosophila_melanogaster name = MitoDrome download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source TransFac::drosophila_melanogaster] # Used by the 12 drosophila genomes name = TransFac download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source TransFac::drosophila_pseudoobscura] # Used by the 12 drosophila genomes name = TransFac download = N order = 50 priority = 1 prio_descr = parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_pseudoobscura/current/gff/dpse-all-r2.29.gff.gz [source flybase_annotation_id::drosophila_melanogaster] # Used by drosophila_melanogaster name = flybase_annotation_id download = N order = 50 priority = 1 prio_descr = Annotation ID assigned by FlyBase parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source flybase_gene_id::drosophila_melanogaster] # Used by drosophila_melanogaster name = flybase_gene_id download = Y order = 100 priority = 1 prio_descr = ID assigned by FlyBase parser = FlybaseParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,Interpro release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source flybase_gene_id::drosophila_pseudoobscura] # Used by drosophila_pseudoobscura name = flybase_gene_id download = Y order = 100 priority = 1 prio_descr = ID assigned by FlyBase parser = FlybaseParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,Interpro release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_pseudoobscura/current/gff/dpse-all-r2.29.gff.gz [source flybase_gene_id::drosophila_grimshawi] # Used by drosophila_grimshawi name = flybase_gene_id download = Y order = 100 priority = 1 prio_descr = ID assigned by FlyBase parser = FlybaseParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,Interpro release_uri = data_uri = ftp://ftp.flybase.org/releases/current/dgri_r1.3/gff/dgri-all-r1.3.gff.gz [source flybase_gene_id::drosophila_willistoni] # Used by drosophila_willistoni name = flybase_gene_id download = Y order = 100 priority = 1 prio_descr = ID assigned by FlyBase parser = FlybaseParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,Interpro release_uri = data_uri = ftp://ftp.flybase.org/releases/current/dwil_r1.3/gff/dwil-all-r1.3.gff.gz [source flybase_gene_id::drosophila_ananassae] # Used by drosophila_ananassae name = flybase_gene_id download = Y order = 100 priority = 1 prio_descr = ID assigned by FlyBase parser = FlybaseParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,Interpro release_uri = data_uri = ftp://ftp.flybase.org/releases/current/dana_r1.3/gff/dana-all-r1.3.gff.gz [source flybase_gene_id::drosophila_yakuba] # Used by drosophila_yakuba name = flybase_gene_id download = Y order = 100 priority = 1 prio_descr = ID assigned by FlyBase parser = FlybaseParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,Interpro release_uri = data_uri = ftp://ftp.flybase.org/releases/current/dyak_r1.3/gff/dyak-all-r1.3.gff.gz [source flybase_gene_id::drosophila_simulans] # Used by drosophila_simulans name = flybase_gene_id download = Y order = 100 priority = 1 prio_descr = ID assigned by FlyBase parser = FlybaseParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,Interpro release_uri = data_uri = ftp://ftp.flybase.org/genomes/dsim/current/gff/dsim-all-r1.4.gff.gz [source flybase_gene_id::drosophila_sechellia] # Used by drosophila_sechellia name = flybase_gene_id download = Y order = 100 priority = 1 prio_descr = ID assigned by FlyBase parser = FlybaseParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,Interpro release_uri = data_uri = ftp://ftp.flybase.org/releases/current/dsec_r1.3/gff/dsec-all-r1.3.gff.gz [source flybase_gene_id::drosophila_erecta] # Used by drosophila_erecta name = flybase_gene_id download = Y order = 100 priority = 1 prio_descr = ID assigned by FlyBase parser = FlybaseParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,Interpro release_uri = data_uri = ftp://ftp.flybase.org/releases/current/dere_r1.3/gff/dere-all-r1.3.gff.gz [source flybase_gene_id::drosophila_persimilis] # Used by drosophila_persimilis name = flybase_gene_id download = Y order = 100 priority = 1 prio_descr = ID assigned by FlyBase parser = FlybaseParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,Interpro release_uri = data_uri = ftp://ftp.flybase.org/releases/current/dper_r1.3/gff/dper-all-r1.3.gff.gz [source flybase_gene_id::drosophila_mojavensis] # Used by drosophila_mojavensis name = flybase_gene_id download = Y order = 100 priority = 1 prio_descr = ID assigned by FlyBase parser = FlybaseParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,Interpro release_uri = data_uri = ftp://ftp.flybase.org/releases/current/dmoj_r1.3/gff/dmoj-all-r1.3.gff.gz [source flybase_gene_id::drosophila_virilis] # Used by drosophila_virilis name = flybase_gene_id download = Y order = 100 priority = 1 prio_descr = ID assigned by FlyBase parser = FlybaseParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,Interpro release_uri = data_uri = ftp://ftp.flybase.org/releases/current/dvir_r1.2/gff/dvir-all-r1.2.gff.gz [source flybase_transcript_id::drosophila_melanogaster] # Used by drosophila_melanogaster name = flybase_transcript_id download = N order = 50 priority = 1 prio_descr = ID assigned by FlyBase parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source flybase_translation_id::drosophila_melanogaster] # Used by drosophila_melanogaster name = flybase_translation_id download = N order = 50 priority = 1 prio_descr = ID assigned by FlyBase parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source FlyBaseCGID_gene::drosophila_melanogaster] # Used by drosophila_melanogaster name = FlyBaseCGID_gene download = N order = 50 priority = 1 prio_descr = FlyBase_Annotation_IDs parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source FlyBaseCGID_transcript::drosophila_melanogaster] # Used by drosophila_melanogaster name = FlyBaseCGID_transcript download = N order = 50 priority = 1 prio_descr = FlyBase_Annotation_IDs parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source FlyBaseCGID_translation::drosophila_melanogaster] # Used by drosophila_melanogaster name = FlyBaseCGID_translation download = N order = 50 priority = 1 prio_descr = FlyBase_Annotation_IDs parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source FlyBaseName_gene::drosophila_melanogaster] # Used by drosophila_melanogaster name = FlyBaseName_gene download = N order = 50 priority = 1 prio_descr = Name assigned to gene in FlyBase gff parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source FlyBaseName_transcript::drosophila_melanogaster] # Used by drosophila_melanogaster name = FlyBaseName_transcript download = N order = 50 priority = 1 prio_descr = Name assigned to transcript in FlyBase gff parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source FlyBaseName_translations::drosophila_melanogaster] # Used by drosophila_melanogaster name = FlyBaseName_translation download = N order = 50 priority = 1 prio_descr = Name assigned to translation in FlyBase gff parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source PHIbase::MULTI] name = PHIbase download = Y order = 50 priority = 1 prio_descr = parser = PHIbaseParser dependent_on = Uniprot/SWISSPROT,Uniprot/SPTREMBL release_uri = data_uri = http://www.phi-base.org/PHI-export.php [species anas_platyrhynchos] taxonomy_id = 8839 aliases = duck, mallard, mallard duck, mallard ducks, anas platyrhynchos, anas boschas, anas domesticus source = EntrezGene::MULTI source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_other source = RefSeq_peptide::MULTI-vertebrate_other source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ArrayExpress::EG [species anolis_carolinensis] taxonomy_id = 28377 aliases = anole, green anole lizard, green anole, american anole, redthroated anole, anoliscarolinensis, anolis_carolinensis source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_other source = RefSeq_peptide::MULTI-vertebrate_other source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [source VB_Community_Annotation::aedes_aegypti] # Used by aedes_aegypti name = VB_Community_Annotation download = Y order = 40 priority = 1 prio_descr = #parser = AedesCAPParser parser = VBCommunitySymbolParser release_uri = data_uri = file:VB_Community_Annotation/Aedes_VB_Community_Annotation.fa [source VB_Community_Annotation_Synonym::aedes_aegypti] # Used by aedes_aegypti name = VB_Community_Annotation_Synonym download = Y order = 40 priority = 1 prio_descr = #parser = AedesCAPParser dependent_on = VB_Community_Annotation parser = VBCommunitySynonymParser release_uri = data_uri = file:VB_Community_Annotation/Aedes_aegypti_synonym.txt [source VB_Community_Annotation::culex_quinquefasciatus] # Used by anopheles_gambiae name = VB_Community_Annotation download = Y order = 40 priority = 1 prio_descr = parser = VBCommunitySymbolParser release_uri = data_uri = file:VB_Community_Annotation/Culex_quinquefasciatus_symbols.txt [source VB_Community_Annotation_Synonym::culex_quinquefasciatus] # Used by culex_quinquefasciatus name = VB_Community_Annotation_Synonym download = Y order = 40 priority = 1 prio_descr = dependent_on = VB_Community_Annotation parser = VBCommunitySynonymParser release_uri = data_uri = file:VB_Community_Annotation/Culex_quinquefasciatus_synonyms.txt [source VB_Community_Annotation::ixodes_scapularis] # Used by ixodes_scapularis name = VB_Community_Annotation download = Y order = 40 priority = 1 prio_descr = parser = VBCommunitySymbolParser release_uri = data_uri = file:VB_Community_Annotation/Ixodes_scapularis_symbols.txt [source AedesGenBank::aedes_aegypti] # Used by aedes_aegypti name = AedesGenBank download = Y order = 30 priority = 1 prio_descr = parser = AedesGenBankParser release_uri = data_uri = file:AedesGenBank/Aedes_proteinID.fa [source VB_Community_Annotation::anopheles_gambiae] # Used by anopheles_gambiae name = VB_Community_Annotation download = Y order = 40 priority = 1 prio_descr = parser = VBCommunitySymbolParser release_uri = data_uri = file:VB_Community_Annotation/Anopheles_gambiae_symbols.txt [source VB_Community_Annotation_Synonym::anopheles_gambiae] # Used by anopheles_gambiae name = VB_Community_Annotation_Synonym download = Y order = 40 priority = 1 prio_descr = dependent_on = VB_Community_Annotation parser = VBCommunitySynonymParser release_uri = data_uri = file:VB_Community_Annotation/Anopheles_gambiae_synonyms.txt [source ImmunoDB::anopheles_gambiae] # Used by anopheles_gambiae name = ImmunoDB download = Y order = 40 priority = 1 prio_descr = parser = ImmunoDBParser release_uri = data_uri = file:ImmunoDB/Anopheles_ImmunoDB.txt [source ImmunoDB::aedes_aegypti] # Used by aedes_aegypti name = ImmunoDB download = Y order = 40 priority = 1 prio_descr = parser = ImmunoDBParser release_uri = data_uri = file:ImmunoDB/Aedes_ImmunoDB.txt [source ImmunoDB::culex_quinquefasciatus] # Used by culex_quinquefasciatus name = ImmunoDB download = Y order = 40 priority = 1 prio_descr = parser = ImmunoDBParser release_uri = data_uri = file:ImmunoDB/Culex_ImmunoDB.txt [source AnoXcel::anopheles_gambiae] # Used by anopheles_gambiae name = AnoXcel download = Y order = 40 priority = 1 prio_descr = parser = AnoXcelParser release_uri = data_uri = file:AnoXcel/anoXcel3.6-Xrefs.txt [source VB_RNA_Description::anopheles_gambiae] # Used by anopheles_gambiae name = VB_RNA_Description download = Y order = 40 priority = 1 prio_descr = parser = VBRNADescriptionParser release_uri = data_uri = file:VB_RNA_Description/An_AgamP3-5_ncRNA_description_lookup.txt [source VB_RNA_Description::aedes_aegypti] # Used by aedes_aegypti name = VB_RNA_Description download = Y order = 40 priority = 1 prio_descr = parser = VBRNADescriptionParser release_uri = data_uri = file:VB_RNA_Description/AaegL1-2_RNA_description.txt [source VB_RNA_Description::culex_quinquefasciatus] # Used by culex_quinquefasciatus name = VB_RNA_Description download = Y order = 40 priority = 1 prio_descr = parser = VBRNADescriptionParser release_uri = data_uri = file:VB_RNA_Description/CpipJ1-2_RNA_description.txt [source VB_External_Description::aedes_aegypti] # Used by aedes_aegypti name = VB_External_Description download = Y order = 40 priority = 1 prio_descr = parser = VBExternalDescriptionParser release_uri = data_uri = file:VB_External_Description/AaegL1-2_gene_description.txt [source VB_External_Description::culex_quinquefasciatus] # Used by culex_quinquefasciatus name = VB_External_Description download = Y order = 40 priority = 1 prio_descr = parser = VBExternalDescriptionParser release_uri = data_uri = file:VB_External_Description/CpipJ1-2_gene_description.txt [source VB_External_Description::ixodes_scapularis] # Used by ixodes_scapularis name = VB_External_Description download = Y order = 40 priority = 1 prio_descr = parser = VBExternalDescriptionParser release_uri = data_uri = file:VB_External_Description/IscaW1-1_gene_description.txt [source ArrayExpress::MULTI] # Used by all ensembl species name = ArrayExpress download = Y order = 50 priority = 1 prio_descr = parser = ArrayExpressParser release_uri = data_uri = script:wget=>http://www.ebi.ac.uk/gxa/dataExport/organisms,project=>ensembl, #data_uri = script:wget=>http://www.ebi.ac.uk/gxa/dataExport/organisms,project=>ensembl,host=>ens-production,dbname=>mr6_human_core, [source ArrayExpress::EG] name = ArrayExpress download = Y order = 50 priority = 1 prio_descr = parser = ArrayExpressParser release_uri = data_uri = script:wget=>http://www.ebi.ac.uk/gxa/dataExport/organisms,project=>ensemblgenomes, [source CCDS::homo_sapiens] # Used by homo_sapiens name = CCDS download = Y order = 10 priority = 1 prio_descr = parser = CCDSParser release_uri = data_uri = script:host=>ens-livemirror,dbname=>ccds_human_71,tran_name=>ENST, [source CCDS::mus_musculus] # Used by mus_musculus name = CCDS download = Y order = 10 priority = 1 prio_descr = parser = CCDSParser release_uri = data_uri = script:host=>ens-livemirror,dbname=>ccds_mouse_70,tran_name=>ENSMUST, [source Celera_Pep::anopheles_gambiae] # Used by anopheles_gambiae name = Celera_Pep download = Y order = 40 priority = 1 prio_descr = parser = CeleraProteinParser release_uri = data_uri = file:Celera/Anopheles_Celera_consensus-proteins_xref.fasta [source Celera_Gene::anopheles_gambiae] name = Celera_Gene download = N order = 40 priority = 1 prio_descr = parser = CeleraProteinParser [source Celera_Trans::anopheles_gambiae] # Used by anopheles_gambiae name = Celera_Trans download = Y order = 40 priority = 1 prio_descr = parser = CeleraTranscriptParser release_uri = data_uri = file:Celera/Anopheles_Celera_consensus-transcripts_xref.fasta [source Codelink::homo_sapiens] # Used by homo_sapiens name = Codelink download = Y order = 50 priority = 1 prio_descr = parser = CodelinkParser release_uri = data_uri = file:Codelink/GEHC_Amersham_CodeLink_HWG_300026.fna [source Codelink::mus_musculus] # Used by mus_musculus name = Codelink download = Y order = 50 priority = 1 prio_descr = parser = CodelinkParser release_uri = data_uri = file:Codelink/GEHC_Amersham_CodeLink_MWG_300033.fna [source Codelink::rattus_norvegicus] # Used by rattus_norvegicus name = Codelink download = Y order = 50 priority = 1 prio_descr = parser = CodelinkParser release_uri = data_uri = file:Codelink/GEHC_Amersham_CodeLink_RWG_300031.fna [source DBASS5::homo_sapiens] # Used by homo_sapiens name = DBASS5 download = Y order = 50 priority = 1 prio_descr = Database of aberrant 5\' splice sites. parser = DBASSParser release_uri = data_uri = http://www.dbass.soton.ac.uk/dbass5/download.aspx?item=gene [source DBASS3::homo_sapiens] # Used by homo_sapiens name = DBASS3 download = Y order = 50 priority = 1 prio_descr = Database of aberrant 3\' splice sites. parser = DBASSParser release_uri = data_uri = http://www.dbass.soton.ac.uk/dbass3/download.asp?item=gene [source EntrezGene::MULTI] # Used by aedes_aegypti, anolis_carolinensis, anopheles_gambiae, acyrthosiphon_pisum, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, cavia_porcellus, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, drosophila_melanogaster, drosophila_pseudoobscura, echinops_telfairi, erinaceus_europaeus, equus_caballus, felis_catus, gallus_gallus, gasterosteus_aculeatus, gorilla_gorilla, homo_sapiens, ixodes_scappularis, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, ochotona_princeps, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes, pongo_abelii, rattus_norvegicus, saccharomyces_cerevisiae, ictidomys_tridecemlineatus, sus_scrofa, taeniopygia_guttata, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis,phaeodactylum_tricornutum,thalassiosira_pseudonana name = EntrezGene download = Y order = 10 priority = 1 prio_descr = parser = EntrezGeneParser release_uri = data_uri = ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz [source WikiGene::MULTI] # used via the EntrezGeneParser, for all species name = WikiGene download = N order = 100 priority = 1 prio_descr = parser = EntrezGeneParser release_uri = data_uri = comes via EntrezGene [source Fantom::mus_musculus] # Used by mus_muscullus name = Fantom download = Y order = 100 priority = 1 prio_descr = parser = FantomParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT release_uri = data_uri = ftp://fantom.gsc.riken.jp/FANTOM3/DDBJ/DDBJ_fantom3_HTC_accession.txt.gz [source GO::MULTI] # Used by aedes_aegypti, anolis_carolinensis, anopheles_gambiae, acyrthosiphon_pisum, apis_mellifera, bos_taurus, canis_familiaris, cavia_porcellus, ciona_intestinalis, ciona_savignyi, dasypus_novemcinctus, drosophila_melanogaster, drosophila_pseudoobscura, drosophila_grimshawi, drosophila_willistoni, drosophila_ananassae, drosophila_yakuba, drosophila_simulans, drosophila_sechellia, drosophila_erecta, drosophila_persimilis, drosophila_mojavensis, drosophila_virilis, echinops_telfairi, erinaceus_europaeus, equus_caballus, felis_catus, gallus_gallus, gasterosteus_aculeatus, ixodes_scappularis, loxodonta_africana, macaca_mulatta, monodelphis_domestica, myotis_lucifugus, ochotona_princeps, ornithorhynchus_anatinus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes, pongo_abelii, saccharomyces_cerevisiae, ictidomys_tridecemlineatus, sus_scrofa, taeniopygia_guttata, takifugu_rubripes, tupaia_belangeri,phaeodactylum_tricornutum,thalassiosira_pseudonana name = GO download = Y order = 80 priority = 1 prio_descr = main parser = GOParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,RefSeq_dna,RefSeq_peptide,SGD release_uri = http://www.ebi.ac.uk/GOA/uniprot_release data_uri = ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz data_uri = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz [source InterproGO::MULTI] # Used by all name = GO download = Y order = 85 priority = 2 prio_descr = interpro parser = InterproGoParser dependent_on = GO release_uri = data_uri = http://www.geneontology.org/external2go/interpro2go [source GO::caenorhabditis_elegans] # Used by caenorhabditis_elegans name = GO download = Y order = 85 priority = 1 prio_descr = main parser = GOParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,RefSeq_dna,RefSeq_peptide,wormbase_all release_uri = data_uri = ftp://ftp.geneontology.org/pub/go/gene-associations/gene_association.wb.gz [source GO::caenorhabditis_elegans_gene] # Used by caenorhabditis_elegans name = GO_to_gene download = Y order = 85 priority = 1 prio_descr = main parser = Use by GOParser dependent_on = release_uri = data_uri = [source GO::danio_rerio] # Used by danio_rerio name = GO download = Y order = 85 priority = 1 prio_descr = main parser = GOParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,RefSeq_dna,RefSeq_peptide release_uri = http://www.ebi.ac.uk/GOA/zebrafish_release data_uri = ftp://ftp.geneontology.org/pub/go/gene-associations/gene_association.zfin.gz data_uri = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz [source goslim_goa::MULTI] # Used by all name = goslim_goa download = Y order = 120 priority = 1 prio_descr = main parser = GOSlimParser dependent_on = GO release_uri = #data_uri = script: data_uri = script:host=>ens-staging1,dbname=>ensembl_ontology_71, [source goslim_goa::EG] # Used by Ensembl Genomes name = goslim_goa download = Y order = 120 priority = 1 prio_descr = main parser = GOSlimParser dependent_on = GO release_uri = data_uri = script:host=>mysql-eg-pan-1.ebi.ac.uk,port=>4276,dbname=>ensemblgenomes_ontology_16_69, [source GO::homo_sapiens] # Used by homo_sapiens name = GO download = Y order = 85 priority = 1 prio_descr = main parser = GOParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,RefSeq_dna,RefSeq_peptide release_uri = http://www.ebi.ac.uk/GOA/human_release data_uri = ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/gene_association.goa_human.gz data_uri = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz [source GO::mus_musculus] # Used by mus_musculus name = GO download = Y order = 85 priority = 1 prio_descr = main parser = GOParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,RefSeq_dna,RefSeq_peptide release_uri = http://www.ebi.ac.uk/GOA/MOUSE_release data_uri = ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/MOUSE/gene_association.goa_mouse.gz data_uri = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz # TODO This has been removed because of the issues it causes with mappings linked to Genes and not to Translations # [source GO::mus_musculus#01] # # Used by mus_musculus # name = GO # download = Y # order = 85 # priority = 1 # prio_descr = goga # parser = GOParser # dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,RefSeq_dna,RefSeq_peptide # release_uri = # data_uri = http://www.geneontology.org/cgi-bin/downloadGOGA.pl/gene_association.mgi.gz # data_uri = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz [source GO::rattus_norvegicus] # Used by rattus_norvegicus name = GO download = Y order = 85 priority = 1 prio_descr = main parser = GOParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,RefSeq_dna,RefSeq_peptide release_uri = http://www.ebi.ac.uk/GOA/rat_release data_uri = ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/RAT/gene_association.goa_rat.gz data_uri = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz [source GO::saccharomyces_cerevisiae] # Used by saccharomyces_cerevisiae name = GO download = Y order = 85 priority = 1 prio_descr = main parser = GOParser dependent_on = Uniprot/SPTREMBL,Uniprot/SWISSPROT,RefSeq_dna,RefSeq_peptide,SGD release_uri = data_uri = ftp://ftp.geneontology.org/pub/go/gene-associations/gene_association.sgd.gz data_uri = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz [source GO::drosophila_melanogaster] # Used by FlyBase name = GO download = N order = 50 priority = 1 prio_descr = flybasego parser = FlybaseParser release_uri = data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.46_FB2012_04/gff/dmel-all-r5.46.gff.gz [source HPA::homo_sapiens] # Used by homo_sapiens name = HPA download = Y order = 50 priority = 1 prio_descr = Human Protein Atlas (HPA) database parser = HPAParser release_uri = data_uri = http://www.proteinatlas.org/download/xref.php #[source IMGT_HLA::homo_sapiens] # Used by homo_sapiens #name = IMGT_HLA #download = Y #order = 100 #priority = 1 #prio_descr = HLA Nomenclature database #parser = HLAParser #release_uri = #data_uri = http://hla.alleles.org/xrefs/embl.txt [source LRG_HGNC_notransfer] name = LRG_HGNC_notransfer download = N order = 30 priority = 5 prio_descr = parser = HGNCParser release_uri = data_uri = [source HGNC::homo_sapiens#01] # Used by homo_sapiens name = HGNC download = Y order = 30 priority = 2 prio_descr = ccds parser = HGNC_CCDSParser release_uri = data_uri = script:wget=>http://www.genenames.org/cgi-bin/hgnc_downloads?title=HGNC+output+data&hgnc_dbtag=on&col=gd_hgnc_id&col=gd_status&col=gd_ccds_ids&status=Approved&status_opt=2&level=pri&=on&where=&order_by=gd_app_sym_sort&limit=&format=text&submit=submit&.cgifields=&.cgifields=level&.cgifields=chr&.cgifields=status&.cgifields=hgnc_dbtag,host=>ens-livemirror,dbname=>ccds_human_71, [source HGNC::homo_sapiens#07] # used by #02 name = HGNC download = N order = 30 priority = 1 prio_descr = ensembl_manual parser = HGNCParser release_uri = data_uri = [source HGNC::homo_sapiens] # Used by homo_sapiens name = HGNC download = Y order = 30 priority = 3 prio_descr = vega parser = VegaOfficialNameParser release_uri = data_uri = script:source=>HGNC,host=>ens-staging1, #data_uri = script:source=>HGNC,chost=>ens-production,cdbname=>mr6_human_core,vdbhost=>ens-production,vdbname=>mr6_human_vega, [source HGNC::homo_sapiens#02] # Used by homo_sapiens name = HGNC download = Y order = 29 priority = 4 prio_descr = entrezgene_manual parser = HGNCParser dependent_on = EntrezGene,Uniprot/SWISSPROT,RefSeq_dna,RefSeq_peptide release_uri = data_uri = http://www.genenames.org/cgi-bin/hgnc_downloads?title=Genew+output+data&col=gd_hgnc_id&col=gd_app_sym&col=gd_app_name&col=gd_prev_sym&col=gd_aliases&col=gd_pub_eg_id&col=gd_pub_refseq_ids&col=md_eg_id&col=md_refseq_id&col=gd_pub_ensembl_id&col=md_prot_id&col=gd_lsdb_links&status=Approved&status=Approved+Non-Human&status_opt=3&=on&where=&order_by=gd_hgnc_id&limit=&format=text&submit=submit&.cgifields=&.cgifields=status&.cgifields=chr [source HGNC::homo_sapiens#03] # Used by #02 name = HGNC download = N order = 30 priority = 5 prio_descr = refseq_manual parser = HGNCParser release_uri = data_uri = [source HGNC::homo_sapiens#09] # used by #02 name = HGNC download = N order = 30 priority = 5 prio_descr = swissprot_manual parser = HGNCParser release_uri = data_uri = [source HGNC::homo_sapiens#04] # used by #02 which produces HGNC refseq and entrezgene types name = HGNC download = N order = 30 priority = 6 prio_descr = entrezgene_mapped parser = HGNCParser release_uri = data_uri = [source HGNC::homo_sapiens#05] # used by #02 which produces HGNC refseq and entrezgene types name = HGNC download = N order = 30 priority = 7 prio_descr = refseq_mapped parser = HGNCParser release_uri = data_uri = [source HGNC::homo_sapiens#06] # used by uniprotParser name = HGNC download = N order = 30 priority = 8 prio_descr = uniprot parser = uniprotparser release_uri = data_uri = see_uniprot [source HGNC::homo_sapiens#08] # used by #02 name = HGNC download = N order = 30 priority = 100 prio_descr = desc_only parser = HGNCParser release_uri = data_uri = [source IKMCs_KOs::mus_musculus] name = IKMCs_KOs download = Y order = 40 priority = 1 prio_descr = parser = IKMCParser release_uri = data_uri = script: [source IKMCs_No_products_available_yet::mus_musculus] name = IKMCs_No_products_available_yet download = N order = 40 priority = 1 prio_descr = parser = IKMCParser release_uri = data_uri = [source IKMCs_Vector_available::mus_musculus] name = IKMCs_Vector_available download = N order = 40 priority = 1 prio_descr = parser = IKMCParser release_uri = data_uri = [source IKMCs_ES_cells_available::mus_musculus] name = IKMCs_ES_cells_available download = N order = 40 priority = 1 prio_descr = parser = IKMCParser release_uri = data_uri = [source IKMCs_Mice_available::mus_musculus] name = IKMCs_Mice_available download = N order = 40 priority = 1 prio_descr = parser = IKMCParser release_uri = data_uri = [source IMGT/GENE_DB::homo_sapiens] # Used by homo_sapiens name = IMGT/GENE_DB download = Y order = 40 priority = 1 prio_descr = parser = SegmentParser release_uri = data_uri = file:Homo_sapiens/Segments/Seg_xrefs.txt [source IMGT/GENE_DB::mus_musculus] # Used by mus_musculus name = IMGT/GENE_DB download = Y order = 40 priority = 1 prio_descr = parser = SegmentParser release_uri = data_uri = file:Mus_musculus/Segments/Seg_xrefs.txt [source IMGT/LIGM_DB::homo_sapiens] # Special source used by SegmentParser. This source is not # used directly by any species. Data is created by the source # 'IMGT/GENE_DB::homo_sapiens'. name = IMGT/LIGM_DB download = N order = 40 priority = 1 prio_descr = parser = SegmentParser release_uri = data_uri = file:Homo_sapiens/Segments/Seg_xrefs.txt [source IMGT/LIGM_DB::mus_musculus] # Special source used by SegmentParser. This source is not # used directly by any species. Data is created by the source # 'IMGT/GENE_DB::mus_musculus'. name = IMGT/LIGM_DB download = N order = 40 priority = 1 prio_descr = parser = SegmentParser release_uri = data_uri = file:Mus_musculus/Segments/Seg_xrefs.txt [source Interpro::MULTI] # Used by aedes_aegypti, anolis_carolinensis, anopheles_gambiae, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, cavia_porcellus, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, echinops_telfairi, erinaceus_europaeus, equus_caballus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, ixodes__scapularis, loxodonta_africana, macaca_mulatta, microcebus_murinus, monodelphis_domestica, mus_musculus, myotis_lucifugus, ochotona_princeps, ornithorhynchus_anatinus, oryctolagus_cuniculus, ottolemur_garnetti, pan_troglodytes,pongo_abelii, oryzias_latipes, rattus_norvegicus, saccharomyces_cerevisiae, sorex_araneus, ictidomys_tridecemlineatus,sus_scrofa, taeniopygia_guttata, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis,thalassiosira_pseudonana, phaeodactylum_tricornutum name = Interpro download = Y order = 70 priority = 1 prio_descr = parser = InterproParser release_uri = ftp://ftp.ebi.ac.uk/pub/databases/interpro/release_notes.txt data_uri = ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz [source MIM_GENE::homo_sapiens] # MIM parse loads data as MIM_GENE or MIM_MORBID not as MIM name = MIM_GENE download = N order = 40 priority = 1 prio_descr = parser = MIMParser release_uri = data_uri = [source MIM_MORBID::homo_sapiens] # MIM parse loads data as MIM_GENE or MIM_MORBID not as MIM name = MIM_MORBID download = N order = 40 priority = 1 prio_descr = parser = MIMParser release_uri = data_uri = [source MIM::homo_sapiens] # Used by homo_sapiens name = MIM download = Y order = 10 priority = 1 prio_descr = parser = MIMParser release_uri = data_uri = ftp://grcf.jhmi.edu/OMIM/omim.txt.Z [source MIM2GENE::homo_sapiens] # Used by homo_sapiens name = MIM2GENE download = Y order = 60 priority = 1 prio_descr = parser = Mim2GeneParser dependent_on = MIM,EntrezGene release_uri = data_uri = ftp://grcf.jhmi.edu/OMIM/mim2gene.txt [source MGI::mus_musculus#04] # Used by mus_musculus name = MGI download = N order = 30 priority = 4 prio_descr = uniprot parser = release_uri = data_uri = taken from uniprot files [source MGI::mus_musculus#01] # Used by mus_musculus name = MGI download = Y order = 30 priority = 1 prio_descr = official parser = MGIParser release_uri = data_uri = ftp://ftp.informatics.jax.org/pub/reports/MRK_ENSEMBL.rpt [source MGI::mus_musculus#02] # Used by mus_musculus name = MGI download = Y order = 45 priority = 2 prio_descr = vega parser = VegaOfficialNameParser release_uri = data_uri = script:source=>MGI,host=>ens-staging2, #data_uri = script:source=>MGI,chost=>ens-production,cdbname=>mr6_mouse_core,vhost=>ens-production,vdbname=>mr6_mouse_vega, [source MGI::mus_musculus#05] # Used by mus_musculus name = MGI download = Y order = 1 priority = 10 prio_descr = descriptions parser = MGI_Desc_Parser release_uri = data_uri = ftp://ftp.informatics.jax.org/pub/reports/MRK_List2.rpt [source MGI::mus_musculus#03] # Used by mus_musculus name = MGI download = Y order = 35 priority = 3 prio_descr = ccds parser = MGI_CCDS_Parser release_uri = data_uri = script:wget=>ftp://ftp.ncbi.nlm.nih.gov/pub/CCDS/current_mouse/CCDS.20120814.txt, [source Orphanet::homo_sapiens] # Used by homo_sapiens name = Orphanet download = Y order = 50 priority = 1 prio_descr = parser = OrphanetParser dependent_on = HGNC release_uri = data_uri = http://www.orphadata.org/data/xml/en_product6.xml [source OTTT::homo_sapiens] # # NOW taken when merging done with havana # # Used by homo_sapiens name = OTTT download = N order = 50 priority = 1 prio_descr = parser = OTTTParser release_uri = data_uri = #data_uri = script:host=>ens-staging,port=>3306,dbname=>homo_sapiens_vega_55_37, [source OTTT::mus_musculus] # # NOW taken when merging done with havana # # Used by mus_musculus name = OTTT download = N order = 50 priority = 1 prio_descr = parser = OTTTParser release_uri = data_uri = [source RGD::rattus_norvegicus] # Used by rattus_norvegicus name = RGD download = Y order = 30 priority = 1 prio_descr = parser = RGDParser dependent_on = RefSeq_dna,RefSeq_peptide release_uri = data_uri = ftp://rgd.mcw.edu/pub/data_release/GENES_RAT.txt [source RefSeq_dna::MULTI-fungi] # Used by saccharomyces_cerevisiae name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi*.rna.fna.gz [source RefSeq_dna::MULTI-Plants] name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/plant/plant*.rna.fna.gz [source RefSeq_dna::MULTI-complete] # Used by phaeodactylum_tricornutum name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/complete/complete*.rna.fna.gz [source RefSeq_dna::MULTI-protozoa] # Used by dictyostelium_discoideum name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/protozoa/protozoa*.rna.fna.gz [source RefSeq_dna::MULTI-invertebrate] # Used by drosophila_melanogaster name = RefSeq_dna download = Y order = 20 priority = 1 prio_descr = refseq parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate*.rna.fna.gz [source RefSeq_dna::MULTI-predicted] # Special source used in RefSeqParser. No species uses this source. name = RefSeq_dna_predicted download = N order = 20 priority = 1 prio_descr = refseq parser = RefSeqParser release_uri = [source RefSeq_mRNA::MULTI] # Special source used in RefSeqParser. No species uses this source. # dependent source is used to provide a link between RefSeq_dna source in SubmitMapper name = RefSeq_mRNA download = N order = 20 priority = 3 prio_descr = refseq parser = RefSeqParser release_uri = [source RefSeq_mRNA::CCDS] # Special source used in RefSeqParser. No species uses this source. name = RefSeq_mRNA download = N order = 20 priority = 2 prio_descr = ccds parser = RefSeqParser release_uri = [source RefSeq_mRNA::otherfeatures] # Special source used in RefSeqCoordinateParser. No species uses this source. name = RefSeq_mRNA download = N order = 20 priority = 1 prio_descr = otherfeatures parser = RefSeqCoordinateParser release_uri = [source RefSeq_peptide::otherfeatures] # Special source used in RefSeqCoordinateParser. No species uses this source. name = RefSeq_peptide download = N order = 20 priority = 1 prio_descr = otherfeatures parser = RefSeqCoordinateParser release_uri = [source RefSeq_import::otherfeatures] # Import RefSeq models from otherfeatures database # Used for human and mouse name = RefSeq_import download = Y order = 20 priority = 1 prio_descr = otherfeatures parser = RefSeqCoordinateParser release_uri = data_uri = script:project=>ensembl, #data_uri = script:project=>ensembl,host=>ens-staging1,dbname=>homo_sapiens_core_70_37,ofhost=>ens-staging1,ofdbname=>homo_sapiens_otherfeatures_70_37, [source RefSeq_ncRNA::MULTI] # Special source used in RefSeqParser. No species uses this source. name = RefSeq_ncRNA download = N order = 20 priority = 1 prio_descr = parser = RefSeqParser release_uri = [source RefSeq_mRNA_predicted::MULTI] # Special source used in RefSeqParser. No species uses this source. name = RefSeq_mRNA_predicted download = N order = 20 priority = 1 prio_descr = refseq parser = RefSeqParser release_uri = [source RefSeq_mRNA_predicted::CCDS] # Special source used in RefSeqParser. No species uses this source. name = RefSeq_mRNA_predicted download = N order = 20 priority = 1 prio_descr = ccds parser = RefSeqParser release_uri = [source RefSeq_ncRNA_predicted::MULTI] # Special source used in RefSeqParser. No species uses this source. name = RefSeq_ncRNA_predicted download = N order = 20 priority = 1 prio_descr = parser = RefSeqParser release_uri = [source RefSeq_dna::MULTI-vertebrate_mammalian] # Used by cavia_porcellus, erinaceus_europaeus, gorilla_gorilla, macaca_mulatta, monodelphis_domestica, myotis_lucifugus, ochotona_princeps, ornithorhynchus_anatinus, ictidomys_tridecemlineatus, tupaia_belangeri, loxodonta_africana, callithrix_jacchus name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian*.rna.fna.gz [source RefSeq_dna::MULTI-vertebrate_other] # Used by anolis_carolinensis, ciona_intestinalis, ciona_savignyi, gasterosteus_aculeatus, oryzias_latipes, taeniopygia_guttata, takifugu_rubripes, xenopus_tropicalis name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other*.rna.fna.gz [source RefSeq_dna::apis_mellifera] # Used by apis_mellifera name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Apis_mellifera/RNA/rna.gbk.gz [source RefSeq_dna::bos_taurus] # Used by bos_taurus name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Bos_taurus/RNA/rna.gbk.gz [source RefSeq_dna::sus_scrofa] # Used by sus_scrofa name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Sus_scrofa/RNA/rna.gbk.gz [source RefSeq_dna::strongylocentrotus_purpuratus] # Used by strongylocentrotus_purpuratus name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Strongylocentrotus_purpuratus/RNA/rna.gbk.gz [source RefSeq_dna::amphimedon_queenslandica] # Used by amphimedon_queenslandica name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Amphimedon_queenslandica/RNA/rna.gbk.gz [source RefSeq_dna::tribolium_castaneum] # Used by tribolium_castaneum name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Tribolium_castaneum/RNA/rna.gbk.gz [source RefSeq_dna::canis_familiaris] # Used by canis_familiaris name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Canis_lupus_familiaris/RNA/rna.gbk.gz [source RefSeq_dna::danio_rerio] # Used by danio_rerio name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/D_rerio/mRNA_Prot/zebrafish.rna.fna.gz [source RefSeq_dna::equus_caballus] # Used by equus_caballus name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Equus_caballus/RNA/rna.gbk.gz [source RefSeq_dna::gallus_gallus] # Used by gallus_gallus name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Gallus_gallus/RNA/rna.gbk.gz [source RefSeq_dna::homo_sapiens] # Used by homo_sapiens name = RefSeq_dna download = Y order = 25 priority = 1 prio_descr = ccds parser = RefSeq_CCDSParser release_uri = data_uri = script:host=>ens-livemirror,dbname=>ccds_human_70, [source RefSeq_dna::homo_sapiens#01] # Used by homo_sapiens name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.rna.gbff.gz [source RefSeq_dna::meleagris_gallopavo] # Used by meleagris_gallopavo name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Meleagris_gallopavo/RNA/rna.gbk.gz [source RefSeq_dna::mus_musculus#01] # Used by mus_musculus name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/M_musculus/mRNA_Prot/mouse.rna.fna.gz [source RefSeq_dna::mus_musculus] # Used by mus_musculus name = RefSeq_dna download = Y order = 25 priority = 1 prio_descr = ccds parser = RefSeq_CCDSParser release_uri = data_uri = script:host=>ens-livemirror,dbname=>ccds_mouse_70, [source RefSeq_dna::pan_troglodytes] # Used by pan_troglodytes name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Pan_troglodytes/RNA/rna.gbk.gz [source RefSeq_dna::papio_anubis] # Used by papio_anubis name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Papio_anubis/RNA/rna.gbk.gz [source RefSeq_dna::pongo_abelii] # Used by pongo_abelii name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Pongo_abelii/RNA/rna.gbk.gz [source RefSeq_dna::rattus_norvegicus] # Used by rattus_norvegicus name = RefSeq_dna download = Y order = 20 priority = 2 prio_descr = refseq parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/R_norvegicus/mRNA_Prot/rat.rna.fna.gz [source RefSeq_peptide::MULTI-fungi] # Used by saccharomyces_cerevisiae name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi*.protein.gpff.gz [source RefSeq_peptide::MULTI-Plants] name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/plant/plant*.protein.gpff.gz [source RefSeq_peptide::MULTI-complete] # Used by phaeodactylum_tricornutum name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/complete/complete*.protein.gpff.gz [source RefSeq_peptide::MULTI-protozoa] # Used by dictyostelium_discoideum name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/protozoa/protozoa*.protein.gpff.gz [source RefSeq_peptide::MULTI-invertebrate] # Used by caenorhabditis_elegans, ciona_savignyi, drosophila_melanogaster name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate*.protein.gpff.gz [source RefSeq_peptide::MULTI-predicted] # Special source used in RefSeqGPFFParser. No species uses this source. name = RefSeq_peptide_predicted download = N order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = [source RefSeq_peptide::MULTI-vertebrate_mammalian] # Used by cavia_porcellus, erinaceus_europaeus, gorilla_gorilla, macaca_mulatta, monodelphis_domestica, myotis_lucifugus, ochotona_princeps, ornithorhynchus_anatinus, ictidomys_tridecemlineatus, tupaia_belangeri, loxodonta_africana, callithrix_jacchus name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian*.protein.gpff.gz [source RefSeq_peptide::MULTI-vertebrate_other] # Used by anolis_carolinensis, ciona_intestinalis, ciona_savignyi, gasterosteus_aculeatus, oryzias_latipes, taeniopygia_guttata, takifugu_rubripes, xenopus_tropicalis name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other*.protein.gpff.gz [source RefSeq_peptide::apis_mellifera] # Used by apis_mellifera name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Apis_mellifera/protein/protein.gbk.gz [source RefSeq_peptide::bos_taurus] # Used by bos_taurus name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Bos_taurus/protein/protein.gbk.gz [source RefSeq_peptide::sus_scrofa] # Used by sus_scrofa name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Sus_scrofa/protein/protein.gbk.gz [source RefSeq_peptide::amphimedon_queenslandica] # Used by amphimedon_queenslandica name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Amphimedon_queenslandica/protein/protein.gbk.gz [source RefSeq_peptide::strongylocentrotus_purpuratus] # Used by strongylocentrotus_purpuratus name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Strongylocentrotus_purpuratus/protein/protein.gbk.gz [source RefSeq_peptide::tribolium_castaneum] # Used by tribolium_castaneum name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Tribolium_castaneum/protein/protein.gbk.gz [source RefSeq_peptide::canis_familiaris] # Used by canis_familiaris name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Canis_lupus_familiaris/protein/protein.gbk.gz [source RefSeq_peptide::danio_rerio] # Used by danio_rerio name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/D_rerio/mRNA_Prot/zebrafish.protein.gpff.gz [source RefSeq_peptide::equus_caballus] # Used by equus_caballus name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Equus_caballus/protein/protein.gbk.gz [source RefSeq_peptide::gallus_gallus] # Used by gallus_gallus name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Gallus_gallus/protein/protein.gbk.gz [source RefSeq_peptide::homo_sapiens] # Used by homo_sapiens name = RefSeq_peptide download = Y order = 20 priority = 2 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.protein.gpff.gz [source RefSeq_peptide::meleagris_gallopavo] # Used by meleagris_gallopavo name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Meleagris_gallopavo/protein/protein.gbk.gz [source RefSeq_peptide::mus_musculus] # Used by mus_musculus name = RefSeq_peptide download = Y order = 20 priority = 2 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/M_musculus/mRNA_Prot/mouse.protein.gpff.gz [source RefSeq_peptide::pan_troglodytes] # Used by pan_troglodytes name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Pan_troglodytes/protein/protein.gbk.gz [source RefSeq_peptide::papio_anubis] # Used by papio_anubis name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Papio_anubis/protein/protein.gbk.gz [source RefSeq_peptide::pongo_abelii] # Used by pongo_abelii name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/genomes/Pongo_abelii/protein/protein.gbk.gz [source RefSeq_peptide::rattus_norvegicus] # Used by rattus_norvegicus name = RefSeq_peptide download = Y order = 20 priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt data_uri = ftp://ftp.ncbi.nih.gov/refseq/R_norvegicus/mRNA_Prot/rat.protein.gpff.gz [source SGD_GENE::saccharomyces_cerevisiae] # Used by saccharomyces_cerevisiae name = SGD_GENE download = N order = 10 priority = 1 prio_descr = parser = SGDParser release_uri = [source SGD_TRANSLATION::saccharomyces_cerevisiae] # Used by saccharomyces_cerevisiae name = SGD_TRANSLATION download = N order = 10 priority = 1 prio_descr = parser = SGDParser release_uri = [source SGD_TRANSCRIPT::saccharomyces_cerevisiae] # Used by saccharomyces_cerevisiae name = SGD_TRANSCRIPT download = N order = 10 priority = 1 prio_descr = parser = SGDParser release_uri = [source SGD::saccharomyces_cerevisiae] # Used by saccharomyces_cerevisiae name = SGD download = Y order = 10 priority = 1 prio_descr = parser = SGDParser release_uri = #data_uri = ftp://genome-ftp.stanford.edu/pub/yeast/gene_registry/registry.genenames.tab data_uri = http://downloads.yeastgenome.org/curation/chromosomal_feature/SGD_features.tab [source PomBase_GENE::schizosaccharomyces_pombe] # Used by schizosaccharomyces_pombe name = PomBase_GENE download = N order = 10 priority = 1 prio_descr = parser = PomBaseParser release_uri = [source PomBase_TRANSCRIPT::schizosaccharomyces_pombe] # Used by schizosaccharomyces_pombe name = PomBase_TRANSCRIPT download = N order = 10 priority = 1 prio_descr = parser = PomBaseParser release_uri = [source PomBase::schizosaccharomyces_pombe] # Used by schizosaccharomyces_pombe name = PomBase download = Y order = 10 priority = 1 prio_descr = parser = PomBaseParser release_uri = data_uri = http://www.ebi.ac.uk/~mcdowall/PomBaseFeatureDescriptions_For-v65.txt [source PGSC_GENE::solanum_tuberosum] # Used by solanum_tuberosum name = PGSC_GENE download = Y order = 10 priority = 1 prio_descr = parser = PGSCParser release_uri = data_uri = http://solanaceae.plantbiology.msu.edu/data/PGSC_DM_v3.4_gene_func.txt.zip [source PHYTOZOME_GMAX_GENE::glycine_max] # Used by glycine_max name = PHYTOZOME_GMAX_GENE download = Y order = 10 priority = 1 prio_descr = parser = PhytozomeGmaxParser release_uri = data_uri = ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v8.0/early_release/Gmax_v1.1/annotation/Gmax_v1.1_189_annotation_info.txt.gz [source UCSC::MULTI] # Special source used in UCSCParser. No species uses this source. name = UCSC download = Y order = 70 priority = 1 prio_descr = parser = UCSCParser [source UCSC::homo_sapiens] # Used by homo_sapiens name = UCSC_hg19 download = Y order = 70 priority = 1 prio_descr = parser = UCSCParser release_uri = ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/README.txt data_uri = ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/knownGene.txt.gz [source UCSC::mus_musculus] # Used by mus_musculus name = UCSC_mm10 download = Y order = 70 priority = 1 prio_descr = parser = UCSCParser release_uri = ftp://hgdownload.cse.ucsc.edu/goldenPath/mm10/database/README.txt data_uri = ftp://hgdownload.cse.ucsc.edu/goldenPath/mm10/database/knownGene.txt.gz [source UniGene::oryzias_latipes] # Used by oryzias_latipes name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Oryzias_latipes/Ola.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Oryzias_latipes/Ola.data.gz [source UniGene::gasterosteus_aculeatus] # Used by oryzias_latipes name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Gasterosteus_aculeatus/Gac.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Gasterosteus_aculeatus/Gac.data.gz [source UniGene::aedes_aegypti] # Used by aedes_aegypti name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Aedes_aegypti/Aae.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Aedes_aegypti/Aae.data.gz [source UniGene::acyrthosiphon_pisum] # Used by acyrthosiphon_pisum name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Acyrthosiphon_pisum/Aps.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Acyrthosiphon_pisum/Aps.data.gz [source UniGene::anopheles_gambiae] # Used by anopheles_gambiae name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Anopheles_gambiae/Aga.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Anopheles_gambiae/Aga.data.gz [source UniGene::apis_mellifera] # Used by apis_mellifera name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Apis_mellifera/Ame.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Apis_mellifera/Ame.data.gz [source UniGene::bos_taurus] # Used by bos_taurus name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Bos_taurus/Bt.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Bos_taurus/Bt.data.gz [source UniGene::oryctolagus_cuniculus] # Used by oryctolagus_cuniculus name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Oryctolagus_cuniculus/Ocu.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Oryctolagus_cuniculus/Ocu.data.gz [source UniGene::sus_scrofa] # Used by sus_scrofa name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Sus_scrofa/Ssc.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Sus_scrofa/Ssc.data.gz [source UniGene::bombyx_mori] # Used by bombyx_mori name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Bombyx_mori/Bmo.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Bombyx_mori/Bmo.data.gz [source UniGene::nematostella_vectensis] # Used by nematostella_vectensis name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Nematostella_vectensis/Nve.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Nematostella_vectensis/Nve.data.gz [source UniGene::tribolium_castaneum] # Used by tribolium_castaneum name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Tribolium_castaneum/Tca.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Tribolium_castaneum/Tca.data.gz [source UniGene::strongylocentrotus_purpuratus] # Used by tribolium_castaneum name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Strongylocentrotus_purpuratus/Spu.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Strongylocentrotus_purpuratus/Spu.data.gz [source UniGene::caenorhabditis_elegans] # Used by caenorhabditis_elegans name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Caenorhabditis_elegans/Cel.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Caenorhabditis_elegans/Cel.data.gz [source UniGene::canis_familiaris] # Used by canis_familiaris name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Canis_lupus_familiaris/Cfa.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Canis_lupus_familiaris/Cfa.data.gz [source UniGene::ciona_intestinalis] # Used by ciona_intestinalis name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Ciona_intestinalis/Cin.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Ciona_intestinalis/Cin.data.gz [source UniGene::ciona_savignyi] # Used by ciona_savignyi name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Ciona_savignyi/Csa.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Ciona_savignyi/Csa.data.gz [source UniGene::culex_quinquefasciatus] # Used by culex_quinquefasciatus name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Culex_quinquefasciatus/Cpi.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Culex_quinquefasciatus/Cpi.data.gz [source UniGene::danio_rerio] # Used by danio_rerio name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Danio_rerio/Dr.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Danio_rerio/Dr.data.gz [source UniGene::equus_caballus] # Used by equus_caballus name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Equus_caballus/Eca.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Equus_caballus/Eca.data.gz [source UniGene::gallus_gallus] # Used by gallus_gallus name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Gallus_gallus/Gga.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Gallus_gallus/Gga.data.gz [source UniGene::homo_sapiens] # Used by homo_sapiens name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Homo_sapiens/Hs.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Homo_sapiens/Hs.data.gz [source UniGene::macaca_mulatta] # Used by macaca_mulatta name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Macaca_mulatta/Mmu.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Macaca_mulatta/Mmu.data.gz [source UniGene::meleagris_gallopavo] # Used by meleagris_gallopavo name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Meleagris_gallopavo/Mga.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Meleagris_gallopavo/Mga.data.gz [source UniGene::monodelphis_domestica] # Used by monodelphis_domestica name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Monodelphis_domestica/Mdm.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Monodelphis_domestica/Mdm.data.gz [source UniGene::ixodes_scapularis] # Used by ixodes_scapularis name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Ixodes_scapularis/Isc.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Ixodes_scapularis/Isc.data.gz [source UniGene::mus_musculus] # Used by mus_musculus name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Mus_musculus/Mm.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Mus_musculus/Mm.data.gz [source UniGene::oreochromis_niloticus] # Used by oreochromis_niloticus name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Oreochromis_niloticus/Oni.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Oreochromis_niloticus/Oni.data.gz [source UniGene::ornithorhynchus_anatinus] # Used by ornithorhynchus_anatinus name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Ornithorhynchus_anatinus/Oan.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Ornithorhynchus_anatinus/Oan.data.gz [source UniGene::pongo_abelii] # Used by pongo_abelii name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Pongo_abelii/Pab.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Pongo_abelii/Pab.data.gz [source UniGene::rattus_norvegicus] # Used by rattus_norvegicus name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Rattus_norvegicus/Rn.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Rattus_norvegicus/Rn.data.gz [source UniGene::taeniopygia_guttata] # Used by taeniopygia_guttata name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Taeniopygia_guttata/Tgu.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Taeniopygia_guttata/Tgu.data.gz [source UniGene::takifugu_rubripes] # Used by takifugu_rubripes name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Takifugu_rubripes/Tru.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Takifugu_rubripes/Tru.data.gz [source UniGene::xenopus_tropicalis] # Used by xenopus_tropicalis name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Xenopus_tropicalis/Str.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Xenopus_tropicalis/Str.data.gz [source UniGene::arabidopsis_thaliana] name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Arabidopsis_thaliana/At.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Arabidopsis_thaliana/At.data.gz [source UniGene::brachypodium_distachyon] name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Brachypodium_distachyon/Bdi.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Brachypodium_distachyon/Bdi.data.gz [source UniGene::brassica_rapa] name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Brassica_rapa/Bra.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Brassica_rapa/Bra.data.gz [source UniGene::chlamydomonas_reinhardtii] name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Chlamydomonas_reinhardtii/Cre.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Chlamydomonas_reinhardtii/Cre.data.gz [source UniGene::glycine_max] name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Glycine_max/Gma.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Glycine_max/Gma.data.gz [source UniGene::hordeum_vulgare] name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Hordeum_vulgare/Hv.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Hordeum_vulgare/Hv.data.gz [source UniGene::physcomitrella_patens] name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Physcomitrella_patens/Ppa.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Physcomitrella_patens/Ppa.data.gz [source UniGene::populus_trichocarpa] name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Populus_trichocarpa/Pth.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Populus_trichocarpa/Pth.data.gz [source UniGene::selaginella_moellendorffii] name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Selaginella_moellendorffii/Smo.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Selaginella_moellendorffii/Smo.data.gz [source UniGene::solanum_lycopersicum] name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Solanum_lycopersicum/Les.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Solanum_lycopersicum/Les.data.gz [source UniGene::solanum_tuberosum] name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Solanum_tuberosum/Stu.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Solanum_tuberosum/Stu.data.gz [source UniGene::sorghum_bicolor] name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Sorghum_bicolor/Sbi.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Sorghum_bicolor/Sbi.data.gz [source UniGene::vitis_vinifera] name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Vitis_vinifera/Vvi.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Vitis_vinifera/Vvi.data.gz [source UniGene::zea_mays] name = UniGene download = Y order = 30 priority = 1 prio_descr = parser = UniGeneParser release_uri = data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Zea_mays/Zm.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Zea_mays/Zm.data.gz [source UniProt::protein_id-predicted] # Special source used in UniProtAltParser. No species uses this source. name = protein_id_predicted download = N order = 20 priority = 1 prio_descr = parser = UniProtAltParser release_uri = [source UniProt::protein_id] # Special source used in UniProtAltParser. No species uses this source. name = protein_id download = N order = 20 priority = 1 prio_descr = parser = UniProtAltParser release_uri = [source UniProt::PDB] # Special source used in UniProtAltParser. No species uses this source. name = PDB download = N order = 20 priority = 1 prio_descr = parser = UniProtAltParser release_uri = [source Uniprot/SPTREMBL::MULTI] # Used by aedes_aegypti, anolis_carolinensis, anopheles_gambiae, acyrthosiphon_pisum, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, cavia_porcellus, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, echinops_telfairi, erinaceus_europaeus, equus_caballus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, ixodes_scapularis, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, ochotona_princeps, ornithorhynchus_anatinus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes,pongo_abelii, rattus_norvegicus, saccharomyces_cerevisiae, ictidomys_tridecemlineatus, sus_scrofa, taeniopygia_guttata, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis, phaeodactylum_tricornutum , thalassiosira_pseudonana name = Uniprot/SPTREMBL download = Y order = 20 priority = 1 prio_descr = parser = UniProtAltParser dependent_on = MIM release_uri = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldate.txt data_uri = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz [source Uniprot/SPTREMBL::MULTI-evidence_gt_2] # Additional source for entires with evidence at protein level > 2 (numerically) for Uniprot/SPTREMBL::MULTI # These are not taken into account when deriving display xrefs or assigning gene status name = Uniprot/SPTREMBL download = N order = 20 priority = 2 prio_descr = protein_evidence_gt_2 parser = UniProtAltParser release_uri = status = LOWEVIDENCE [source Uniprot/SPTREMBL::MULTI-predicted] # Special source used in UniProtAltParser. No species uses this source. name = Uniprot/SPTREMBL_predicted download = N order = 20 priority = 1 prio_descr = parser = UniProtAltParser release_uri = [source Uniprot/SWISSPROT::MULTI] # Used by aedes_aegypti, anolis_carolinensis, anopheles_gambiae, acyrthosiphon_pisum, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, cavia_porcellus, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, drosophila_melanogaster, echinops_telfairi, erinaceus_europaeus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, ochotona_princeps, ornithorhynchus_anatinus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes, pongo_abelii, rattus_norvegicus, saccharomyces_cerevisiae, ictidomys_tridecemlineatus, sus_scrofa, taeniopygia_guttata, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis, phaeodactylum_tricornutum , thalassiosira_pseudonana name = Uniprot/SWISSPROT download = Y order = 20 priority = 2 prio_descr = sequence_mapped parser = UniProtAltParser dependent_on = MIM release_uri = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldate.txt data_uri = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz # # Direct Uniprot mapping. # Note these have to be done LAST so that we get all # the dependent xrefs that are available from the original. # swissprot entry [source Uniprot/SWISSPROT::DIRECT] name = Uniprot/SWISSPROT download = Y order = 22 priority = 1 prio_descr = uniprot_mapped parser = UniProtDirectParser dependent_on = Unprot/SWISSPROT release_uri = data_uri = script:wget=>ftp://ftp.ebi.ac.uk/pub/contrib/xrefs/ens-sp.map,host=>ens-staging1,dbname=>ensembl_production, [source Uniprot/SWISSPROT::MULTI-predicted] # Special source used in UniProtAltParser. No species uses this source. name = Uniprot/SWISSPROT_predicted download = N order = 20 priority = 1 prio_descr = parser = UniProtAltParser release_uri = [source Uniprot_genename] # Special source used in UniProtAltParser foir gene names.. name = Uniprot_genename download = N order = 20 priority = 1 prio_descr = parser = UniProtAltParser release_uri = data_uri = [source Uniprot/SWISSPROT::drosophila_melanogaster] # Used by drosophila_melanogaster name = Uniprot/SWISSPROT download = Y order = 20 priority = 1 prio_descr = parser = UniProtParser_descriptions_only release_uri = data_uri = ftp://ftp.ebi.ac.uk/pub/databases/integr8/uniprot/proteomes/17.D_melanogaster.dat.gz [source Uniprot/SWISSPROT::drosophila_pseudoobscura] # Used by drosophila_pseudoobscura name = Uniprot/SWISSPROT download = Y order = 20 priority = 1 prio_descr = parser = UniProtParser_descriptions_only release_uri = data_uri = ftp://ftp.ebi.ac.uk/pub/databases/integr8/uniprot/proteomes/25396.D_pseudoobscura.dat.gz [source Uniprot/SPTREMBL::drosophila_melanogaster] # Used by drosophila_melanogaster name = Uniprot/SPTREMBL download = Y order = 20 priority = 1 prio_descr = parser = UniProtParser_descriptions_only release_uri = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldate.txt data_uri = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz [source Uniprot::EMBL-predicted] # Special source used in UniProtAltParser. No species uses this source. name = EMBL_predicted download = N order = 20 priority = 1 prio_descr = parser = UniProtAltParser release_uri = [source Uniprot::EMBL] # Special source used in UniProtAltParser. No species uses this source. name = EMBL download = N order = 20 priority = 1 prio_descr = parser = UniProtAltParser release_uri = [source UniParc::MULTI] name = UniParc download = Y order = 20 priority = 1 prio_descr = parser = UniParcParser release_uri = data_uri = ftp://ftp.ebi.ac.uk/pub/contrib/uniparc/upidump.lis [source HGNC_curated_transcript::homo_sapiens] name = HGNC_curated_transcript_notransfer download = Y order = 49 priority = 1 prio_descr = curated with transcript number postfix parser = curated_transcriptParser release_uri = data_uri = script:source=>HGNC,host=>ens-staging1, #data_uri = script:source=>HGNC,chost=>ens-production,cdbname=>mr6_human_core,vdbname=>mr6_human_vega,vhost=>ens-production, [source PIGGY_curated_transcript::sus_scrofa] name = PIGGY_curated_transcript_notransfer download = Y order = 49 priority = 1 prio_descr = curated with transcript number postfix parser = curated_transcriptParser release_uri = data_uri = script:source=>PIGGY,host=>ens-staging2, #data_uri = script:source=>PIGGY,chost=>ens-production,cdbname=>mr6_pig_core,vdbname=>mr6_pig_vega,vhost=>ens-production, [source PIGGY::sus_scrofa] # Used by danio_rerio name = PIGGY download = Y order = 30 priority = 1 prio_descr = vega parser = VegaOfficialNameParser release_uri = data_uri = script:host=>ens-staging2,source=>PIGGY, [source PIGGY_transcript_name] name = PIGGY_transcript_name download = N order = 49 priority = 1 prio_descr = parser = done_in_official_naming release_uri = [source PIGGY_gene_name] name = PIGGY_gene_name download = N order = 49 priority = 1 prio_descr = parser = done_in_official_naming release_uri = [source HGNC_transcript_name] name = HGNC_transcript_name download = N order = 49 priority = 1 prio_descr = parser = done_in_official_naming release_uri = [source HGNC_gene_name] name = HGNC_gene_name download = N order = 49 priority = 1 prio_descr = parser = done_in_official_naming release_uri = [source MGI_curated_transcript::mus_musculus] name = MGI_curated_transcript_notransfer download = Y order = 49 priority = 1 prio_descr = parser = curated_transcriptParser release_uri = data_uri = script:source=>MGI,host=>ens-staging2, #data_uri = script:source=>MGI,chost=>ens-production,cdbname=>mr6_mouse_core,vdbname=>mr6_pig_vega,vhost=>ens-production, [source MGI_automatic_transcript::mus_musculus] name = MGI_automatic_transcript_notransfer download = N order = 49 priority = 1 prio_descr = parser = done_in_official_naming release_uri = [source MGI_gene_name] # Used homo_sapiens,mus_musculus name = MGI_gene_name download = N order = 70 priority = 1 prio_descr = parser = comes via official naming release_uri = data_uri = [source MGI_transcript_name] # Used homo_sapiens,mus_musculus name = MGI_transcript_name download = N order = 70 priority = 1 prio_descr = parser = comes via official naming release_uri = data_uri = [source Clone_based_vega_transcript::homo_sapiens] name = Clone_based_vega_transcript download = N order = 50 priority = 1 prio_descr = parser = HGNC_curated_transcriptParser release_uri = data_uri = loaded as part of HGNC_curated_transcript [source Clone_based_ensembl_transcript::homo_sapiens] name = Clone_based_ensembl_transcript download = N order = 50 priority = 1 prio_descr = parser = done_in_official_naming release_uri = [source Clone_based_vega_gene::homo_sapiens] name = Clone_based_vega_gene download = N order = 50 priority = 1 prio_descr = parser = done_in_official_naming release_uri = [source Clone_based_ensembl_gene::homo_sapiens] name = Clone_based_ensembl_gene download = N order = 50 priority = 1 prio_descr = parser = done_in_official_naming release_uri = [source Xenopus_Jamboree::xenopus_tropicalis] # Used by xenopus_tropicalis name = Xenopus_Jamboree download = Y order = 20 priority = 1 prio_descr = parser = XenopusJamboreeParser release_uri = data_uri = ftp://ftp.xenbase.org/pub/GenePageReports/GenePageEnsemblModelMapping.txt [source ZFIN_ID::danio_rerio#01] # Used by danio_rerio name = ZFIN_ID download = Y order = 31 priority = 1 prio_descr = uniprot/refseq parser = ZFINParser release_uri = data_uri = http://zfin.org/data_transfer/Downloads/refseq.txt data_uri = http://zfin.org/data_transfer/Downloads/uniprot.txt data_uri = http://zfin.org/data_transfer/Downloads/aliases.txt data_uri = http://zfin.org/data_transfer/Downloads/gene_seq.txt [source ZFIN_ID::danio_rerio#02] # Used by danio_rerio name = ZFIN_ID download = Y order = 30 priority = 2 prio_descr = vega parser = VegaOfficialNameParser release_uri = data_uri = script:source=>ZFIN_ID,host=>ens-staging1, #data_uri = script:source=>ZFIN_ID,chost=>ens-production,cdbname=>mr6_danio_core,vhost=>ens-production,vdbname=>mr6_danio_vega, [source ZFIN_ID::danio_rerio#03] # Used by danio_rerio name = ZFIN_ID download = Y order = 1 priority = 10 prio_descr = description_only parser = ZFINDescParser release_uri = #data_uri = http://zfin.org/data_transfer/Downloads/genetic_markers.txt data_uri = ftp://zfin.org/pub/transfer/MEOW/zfin_genes.txt [source ZFIN_ID_curated_transcript::danio_rerio] name = ZFIN_ID_curated_transcript_notransfer download = Y order = 49 priority = 1 prio_descr = curated with transcript number postfix parser = curated_transcriptParser release_uri = data_uri = script:source=>ZFIN_ID,host=>ens-staging1, #data_uri = script:source=>ZFIN_ID,chost=>ens-production,cdbname=>mr6_danio_core,vdbname=>mr6_pig_vega,vhost=>ens-production, [source ZFIN_ID_transcript_name] name = ZFIN_ID_transcript_name download = N order = 49 priority = 1 prio_descr = parser = done_in_official_naming release_uri = [source ZFIN_ID_gene_name] name = ZFIN_ID_gene_name download = N order = 49 priority = 1 prio_descr = parser = done_in_official_naming release_uri = [source cint_aniseed_v1::ciona_intestinalis] # Used by ciona_intestinalis name = cint_aniseed_v1 download = Y order = 50 priority = 1 prio_descr = parser = JGI_ProteinParser release_uri = data_uri = ftp://ftp.jgi-psf.org/pub/JGI_data/Ciona/v1.0/ciona.prot.fasta.gz [source cint_jgi_v1::ciona_intestinalis] # Used by ciona_intestinalis name = cint_jgi_v1 download = Y order = 50 priority = 1 prio_descr = parser = JGI_ProteinParser release_uri = data_uri = ftp://ftp.jgi-psf.org/pub/JGI_data/Ciona/v1.0/ciona.prot.fasta.gz [source RFAM::MULTI] # Used by bos_taurus, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, drosophila_pseudoobscura, erinaceus_europaeus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes,pongo_abelii, rattus_norvegicus, ictidomys_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis, ornithorhynchus_anatinus name = RFAM download = Y order = 70 priority = 1 prio_descr = parser = RFAMParser release_uri = data_uri = script:wget=>ftp://ftp.sanger.ac.uk/pub/databases/Rfam/CURRENT/Rfam.seed.gz, #data_uri = script:wget=>ftp://ftp.sanger.ac.uk/pub/databases/Rfam/CURRENT/Rfam.seed.gz,host=>ens-production,dbname=>mr6_pig_core, [source RFAM::EG] name = RFAM download = Y order = 70 priority = 1 prio_descr = parser = CoreXrefParser release_uri = data_uri = script:object_type=>gene,project=>ensemblgenomes,copy_description_from_object=>1, [source miRBase::MULTI] # Used by bos_taurus, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, erinaceus_europaeus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes,pongo_abelii, rattus_norvegicus, ictidomys_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis, ornithorhynchus_anatinus name = miRBase download = Y order = 70 priority = 1 prio_descr = parser = miRBaseParser release_uri = data_uri = ftp://mirbase.org/pub/mirbase/CURRENT/miRNA.dat.gz [source miRBase_gene_name] # Used homo_sapiens,mus_musculus name = miRBase_gene_name download = N order = 70 priority = 1 prio_descr = parser = comes via official naming release_uri = data_uri = [source miRBase_transcript_name] # Used homo_sapiens,mus_musculus name = miRBase_transcript_name download = N order = 70 priority = 1 prio_descr = parser = comes via official naming release_uri = data_uri = [source RFAM_gene_name] # Used homo_sapiens,mus_musculus name = RFAM_gene_name download = N order = 70 priority = 1 prio_descr = parser = comes via official naming release_uri = data_uri = [source RFAM_transcript_name] # Used homo_sapiens,mus_musculus name = RFAM_transcript_name download = N order = 70 priority = 1 prio_descr = parser = comes via official naming release_uri = data_uri = [source Uniprot_genename_gene_name] # Used by merged species: homo_sapiens,mus_musculus, danio_rerio and sus_scrofa name = Uniprot_genename_gene_name download = N order = 70 priority = 1 prio_descr = parser = comes via official naming release_uri = data_uri = [source Uniprot_genename_transcript_name] # Used by merged species: homo_sapiens,mus_musculus, danio_rerio and sus_scrofa name = Uniprot_genename_transcript_name download = N order = 70 priority = 1 prio_descr = parser = comes via official naming release_uri = data_uri = [source RNAMMER::MULTI] # Used by EnsemblGenomes, e.g. aspergillus_clavatus, aspergillus_flavus, aspergillus_fumigatus, aspergillus_nidulans, aspergillus_niger, aspergillus_oryzae, aspergillus_terreus, neosartorya_fischeri name = RNAMMER download = Y order = 70 priority = 1 prio_descr = parser = CoreXrefParser release_uri = data_uri = script:biotype=>rRNA,object_type=>gene,project=>ensemblgenomes,copy_description_from_object=>1, [source TRNASCAN_SE::MULTI] # Used by EnsemblGenomes, e.g. aspergillus_clavatus, aspergillus_flavus, aspergillus_fumigatus, aspergillus_nidulans, aspergillus_niger, aspergillus_oryzae, aspergillus_terreus, neosartorya_fischeri name = TRNASCAN_SE download = Y order = 70 priority = 1 prio_descr = parser = CoreXrefParser release_uri = data_uri = script:biotype=>tRNA,object_type=>gene,project=>ensemblgenomes,copy_description_from_object=>1, [source ncRNA_EG::EG] # Used by EnsemblGenomes, e.g. aspergillus_clavatus, aspergillus_flavus, aspergillus_fumigatus, aspergillus_nidulans, aspergillus_niger, aspergillus_oryzae, aspergillus_terreus, neosartorya_fischeri # replaces TRNASCAN; RNAMMER and RFAM::EG name = ncRNA_EG download = Y order = 70 priority = 1 prio_descr = parser = CoreXrefParser release_uri = data_uri = script:logic_name=>ncrna_eg,object_type=>gene,project=>ensemblgenomes,copy_description_from_object=>1, [source misc_EG::EG] # Used by EnsemblGenomes to maintain sources of xrefs which don't have a proper parser yet. name = misc_EG download = Y order = 70 priority = 1 prio_descr = parser = EG_DBParser release_uri = data_uri = script:host=>mysql-eg-pan-1,port=>4276,dbname=>EG_Xrefs, [source ENA_GENE::MULTI] # Used by aspergillus_niger name = ENA_GENE download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source CADRE::MULTI] # Used by aspergillus_clavatus, aspergillus_flavus, aspergillus_fumigatus, aspergillus_nidulans, aspergillus_niger, aspergillus_oryzae, aspergillus_terreus, neosartorya_fischeri name = CADRE download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source CADRE_AFum_A1163::MULTI] # Used by aspergillus_fumigatusa1163 name = CADRE_Afum_A1163 download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source AspGD::MULTI] # Used by aspergillus_nidulans name = AspGD download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source GeneDB::MULTI] # Used by plasmodium_falciparum, trypanosoma_brucei, leishmania_major, schistosoma_mansoni name = GeneDB download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source GeneDB_Spombe::MULTI] # Used by schizosaccharomyces_pombe name = GeneDB_Spombe download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source phatr_jgi_v2::MULTI] # Used by Pt name = phatr_jgi_v2 download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source phatr_jgi_v2_bd::MULTI] # Used by Pt name = phatr_jgi_v2_bd download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source thaps_jgi_v2::MULTI] # Used by Tp name = thaps_jgi_v2 download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source physo1_jgi_v1.1_gene::MULTI] # Used by Pt name = physo1_jgi_v1.1_gene download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source PGD_GENE::MULTI] # Used by Tp name = PGD_GENE download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source physo1_jgi_v1.1::MULTI] # Used by Pt name = physo1_jgi_v1.1 download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source physo1_jgi_v1.1_transcript::MULTI] # Used by Pt name = physo1_jgi_v1.1_transcript download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source phyra_jgi_v1.1_gene::MULTI] # Used by Pt name = phyra_jgi_v1.1_gene download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source phyra_jgi_v1.1::MULTI] # Used by Pt name = phyra_jgi_v1.1 download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source phyra_jgi_v1.1_transcript::MULTI] # Used by Pt name = phyra_jgi_v1.1_transcript download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source BROAD_Magnaporthe_DB::MULTI] # Used by magnaporthe_oryzae, magnaporthe_poae and gaeumannomyces_graminis name = BROAD_Magnaporthe_DB download = Y order = 70 priority = 1 prio_descr = parser = Broad_MagnaportheDBParser release_uri = data_uri = http://www.broadinstitute.org/annotation/genome/magnaporthe_comparative/download/?sp=EAGenomeSummary&sp=SGae_graminis_V2&sp=S.gz [source BROAD_P_infestans::MULTI] # Used by phytophthora_infestans name = BROAD_P_infestans download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source BROAD_P_infestans_GENE::MULTI] # Used by phytophthora_infestans name = BROAD_P_infestans_GENE download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source BROAD_P_infestans_TRANSCRIPT::MULTI] # Used by phytophthora_infestans name = BROAD_P_infestans_TRANSCRIPT download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source thaps_jgi_v2_bd::MULTI] # Used by Tp name = thaps_jgi_v2_bd download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source BROAD_U_maydis::MULTI] # Used by ustilago_maydis name = BROAD_U_maydis download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source BROAD_F_oxysporum::MULTI] # Used by fusarium_oxysporum name = BROAD_F_oxysporum download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source BROAD_g_zeae::MULTI] # Used by gibberella_zeae name = BROAD_G_zeae download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source BROAD_G_moniliformis::MULTI] # Used by gibberella_moniliformis name = BROAD_G_moniliformis download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source SCHISTODB::MULTI] # Used by schistosoma_mansoni name = SCHISTODB download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source triad_jgi_v1.0::MULTI] # Used by trichoplax_adhaerens name = triad_jgi_v1.0 download = N order = 70 priority = 1 prio_descr = parser = release_uri = data_uri = [source wormbase::caenorhabditis_elegans] name = wormbase_all download = Y order = 50 priority = 1 prio_descr = parser = WormbaseDirectParser release_uri = data_uri = ftp://ftp.sanger.ac.uk/pub2/wormbase/releases/WS230/species/c_elegans/c_elegans.WS230.xrefs.txt.gz [source wormpep_id::caenorhabditis_elegans] # Used by caenorhabditis_elegans name = wormpep_id download = N order = 50 priority = 1 prio_descr = parser = comes from WormbaseDirectParser release_uri = data_uri = [source wormbase_gene::caenorhabditis_elegans] # Used by caenorhabditis_elegans comes from WormbaseDatabaseStableIDParser name = wormbase_gene download = N order = 50 priority = 1 prio_descr = parser = comes from WormbaseDirectParser release_uri = data_uri = [source wormbase_locus::caenorhabditis_elegans] # Used by caenorhabditis_elegans comes from WormbaseDatabaseStableIDParser name = wormbase_locus download = N order = 50 priority = 1 prio_descr = parser = comes from WormbaseDirectParser release_uri = data_uri = [source wormbase_transcript::caenorhabditis_elegans] # Used by caenorhabditis_elegans comes from WormbaseDatabaseStableIDParser name = wormbase_transcript download = N order = 50 priority = 1 prio_descr = parser = comes from WormbaseDirectParser release_uri = data_uri = [source Platypus_olfactory_receptor::ornithorhynchus_anatinus] # Used by ornithorhynchus_anatinus name = Platypus_olfactory_receptor download = Y order = 40 priority = 1 prio_descr = parser = DirectParser release_uri = data_uri = file:platypus/olfactory_receptor_list [source Oxford_FGU_Oa_gene::ornithorhynchus_anatinus] # Used by ornithorhynchus_anatinus name = Oxford_FGU_Oa_gene download = Y order = 40 priority = 1 prio_descr = parser = DirectParser release_uri = data_uri = file:platypus/oxford_gene_list [source Oxford_FGU_Oa_tscript::ornithorhynchus_anatinus] # Used by ornithorhynchus_anatinus name = Oxford_FGU_Oa_tscript download = Y order = 40 priority = 1 prio_descr = parser = DirectParser release_uri = data_uri = file:platypus/oxford_transcript_list [source Genoscope_pred_gene::tetraodon_nigroviridis] # Used by name = Genoscope_pred_gene download = Y order = 40 priority = 1 prio_descr = parser = DirectParser release_uri = data_uri = file:tetraodon_nigroviridis/genoscope_gene_list [source Genoscope_pred_transcript::tetraodon_nigroviridis] # Used by name = Genoscope_tnig_transcript download = Y order = 40 priority = 1 prio_descr = parser = DirectParser release_uri = data_uri = file:tetraodon_nigroviridis/genoscope_transcript_list [source Genoscope_pred_translation::tetraodon_nigroviridis] # Used by name = Genoscope_pred_translation download = Y order = 40 priority = 1 prio_descr = parser = DirectParser release_uri = data_uri = file:tetraodon_nigroviridis/genoscope_translation_list [source Genoscope_annotated_gene::tetraodon_nigroviridis] # Used by name = Genoscope_annotated_gene download = Y order = 40 priority = 1 prio_descr = parser = DirectParser release_uri = data_uri = file:tetraodon_nigroviridis/genescope_annotated_gene_list [source PUBMED::anopheles_gambiae] # Used by Anopheles gambiae name = PUBMED download = Y order = 40 priority = 1 prio_descr = parser = VBPubMedParser release_uri = data_uri = file:PubMed/PubMed_citations_Anopheles_gambiae_PEST.txt [source PUBMED::aedes_aegypti] # Used by Aedes aegypti name = PUBMED download = Y order = 40 priority = 1 prio_descr = parser = VBPubMedParser release_uri = data_uri = file:PubMed/PubMed_citations_Aedes_aegypti_Liverpool.txt [source PUBMED::culex_quinquefasciatus] # Used by Aedes aegypti name = PUBMED download = Y order = 40 priority = 1 prio_descr = parser = VBPubMedParser release_uri = data_uri = file:PubMed/PubMed_citations_Culex_quinquefasciatus_JHB.txt [source PUBMED::ixodes_scapularis] # Used by Aedes aegypti name = PUBMED download = Y order = 40 priority = 1 prio_descr = parser = VBPubMedParser release_uri = data_uri = file:PubMed/PubMed_citations_Ixodes_scapularis_Wikel.txt [source Ribosomal_Protein_Gene_DB::anopheles_gambiae] # Used by Anopheles gambiae name = Ribosomal_Protein_Gene_DB download = Y order = 40 priority = 1 prio_descr = parser = VBribosomalParser release_uri = data_uri = file:Ribosomal_Protein_Gene_Database/RPG_Anopheles_gambiae_PEST.txt ######################################################################## # SPECIES # # # # Keys: # # taxonomy_id - taxonomy ID of species/strain (multiple, required) # # aliases - comma-separated list of aliases (optional) # # source - sources use for this species/strain # # (multiple, required) # # # ######################################################################## [species aedes_aegypti] taxonomy_id = 7159 aliases = aaegypti, aedes, aedesaegypti #source = AedesGenBank::aedes_aegypti source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = UniGene::aedes_aegypti source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ImmunoDB::aedes_aegypti source = VB_External_Description::aedes_aegypti source = VB_RNA_Description::aedes_aegypti source = VB_Community_Annotation::aedes_aegypti source = VB_Community_Annotation_Synonym::aedes_aegypti source = PUBMED::aedes_aegypti source = ArrayExpress::EG [species acyrthosiphon_pisum] taxonomy_id = 7029 aliases = apisum, acyrthosiphon, acyrthosiphonpisum, pea aphid source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = UniGene::acyrthosiphon_pisum source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ArrayExpress::EG [species ailuropoda_melanoleuca] taxonomy_id = 9646 aliases = Panda, panda, giant panda, ailuropodamelanoleuca source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian #source = UniGene::ailuropoda_melanoleuca ## unigene source not available for this species source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species anopheles_darlingi] taxonomy_id = 43151 aliases = adarlingi, anophelesdarlingi, American malaria mosquito source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ArrayExpress::EG [species anopheles_gambiae] taxonomy_id = 7165 taxonomy_id = 180454 aliases = agambiae, anopheles, anophelesgambiae, mosquito source = Celera_Pep::anopheles_gambiae source = Celera_Gene::anopheles_gambiae source = Celera_Trans::anopheles_gambiae source = VB_Community_Annotation::anopheles_gambiae source = VB_Community_Annotation_Synonym::anopheles_gambiae source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = RefSeq_mRNA_predicted::MULTI source = UniGene::anopheles_gambiae source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = VB_RNA_Description::anopheles_gambiae source = ImmunoDB::anopheles_gambiae source = PUBMED::anopheles_gambiae source = Ribosomal_Protein_Gene_DB::anopheles_gambiae source = AnoXcel::anopheles_gambiae source = ArrayExpress::EG [species apis_mellifera] taxonomy_id = 7460 aliases = amellifera, apismellifera, honeybee source = EntrezGene::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::apis_mellifera source = RefSeq_peptide::apis_mellifera source = UniGene::apis_mellifera source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ArrayExpress::EG [species aspergillus_clavatus] taxonomy_id = 5057 taxonomy_id = 344612 aliases = aspergillusclavatus, aclavatus, Aspergillus clavatus, Aspergillus clavatus NRRL 1 source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::MULTI source = TRNASCAN_SE::MULTI source = RNAMMER::MULTI source = ArrayExpress::EG [species aspergillus_flavus] taxonomy_id = 5059 taxonomy_id = 332952 aliases = aspergillusflavus, aflavus, Aspergillus flavus, Aspergillus flavus NRRL3357 source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::MULTI source = TRNASCAN_SE::MULTI source = RNAMMER::MULTI source = ArrayExpress::EG [species aspergillus_fumigatus] taxonomy_id = 330879 aliases = aspergillusfumigatus, afumigatus, Aspergillus fumigatus, Aspergillus fumigatus Af293,Sartorya fumigata,sartoryafumigata,sfumigata source = EntrezGene::MULTI source = goslim_goa::EG source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::MULTI source = TRNASCAN_SE::MULTI source = RNAMMER::MULTI source = ArrayExpress::EG [species afumigatusa1163] taxonomy_id = 451804 aliases = aspergillusfumigatus, afumigatus, Aspergillus fumigatus, Aspergillus fumigatus A1163,Aspergillus fumigatus CEA10,Sartorya fumigata,sartoryafumigata,sfumigata source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::MULTI source = TRNASCAN_SE::MULTI source = RNAMMER::MULTI source = ArrayExpress::EG [species aspergillus_nidulans] taxonomy_id = 162425 taxonomy_id = 227321 aliases = aspergillusnidulans, anidulans, Aspergillus nidulellus, aspergillusnidulellus, anidulellus, Emericella nidulans, emericellanidulans, enidulans, Aspergillus nidulans FGSC A4 source = EntrezGene::MULTI source = goslim_goa::EG source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::MULTI source = TRNASCAN_SE::MULTI source = RNAMMER::MULTI source = ArrayExpress::EG [species aspergillus_niger] taxonomy_id = 425011 aliases = aspergillusniger, aniger, Aspergillus niger, Aspergillus niger CBS 513.88 source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species aspergillus_oryzae] taxonomy_id = 5062 taxonomy_id = 510516 aliases = aspergillusoryzae, aoryzae, Aspergillus oryzae, Aspergillus oryzae RIB40 source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::MULTI source = TRNASCAN_SE::MULTI source = RNAMMER::MULTI source = ArrayExpress::EG [species aspergillus_terreus] taxonomy_id = 33178 taxonomy_id = 341663 aliases = aspergillusterreus, aterreus, Aspergillus terreus, Aspergillus terreus NIH2624 source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::MULTI source = TRNASCAN_SE::MULTI source = RNAMMER::MULTI source = ArrayExpress::EG [species cavia_porcellus] taxonomy_id = 10141 aliases = cavia porcellus,guinea_pig,guinea pig source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species neosartorya_fischeri] taxonomy_id = 36630 taxonomy_id = 331117 aliases = neosartoryafischeri, nfischeri, Neosartorya fischeri, Neosartorya fischeri NRRL 181 source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::MULTI source = TRNASCAN_SE::MULTI source = RNAMMER::MULTI source = ArrayExpress::EG [species oreochromis_niloticus] taxonomy_id = 8128 aliases = oreochromis_niloticus, tilapia, nile tilapia, Tilapia, Nile tilapia source = EntrezGene::MULTI source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_other source = RefSeq_peptide::MULTI-vertebrate_other source = UniGene::oreochromis_niloticus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = goslim_goa::MULTI source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species puccinia_graministritici] taxonomy_id = 418459 taxonomy_id = 56615 aliases = pucciniagraministritici, pgraminis, Puccinia graminis f. sp. tritici, Puccinia graminis f. sp. tritici CRL 75-36-700-3 source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = PHIbase::MULTI source = ArrayExpress::EG [species mycosphaerella_graminicola] taxonomy_id = 336722 taxonomy_id = 54734 aliases = mycosphaerellagraminicola, mgraminicola, Mycosphaerella graminicola, Mycosphaerella graminicola IPO323 source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = PHIbase::MULTI source = ArrayExpress::EG [species trichoplax_adhaerens] taxonomy_id = 10228 aliases = trichoplaxadhaerens, tadhaerens, Trichoplax adhaerens, Trichoplax adhaerens Grell-BS-1999 source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species schistosoma_mansoni] taxonomy_id = 6183 aliases = schistosomamansoni, smansoni, Schistosoma mansoni, Schistosoma mansoni Puerto Rico source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species leishmania_major] taxonomy_id = 5664 taxonomy_id = 347515 aliases = leishmaniamajor, Leishmania major, Leishmania major Freidlin, Leishmania major strain Freidlin, lmajor source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-protozoa source = RefSeq_peptide::MULTI-protozoa source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::MULTI source = TRNASCAN_SE::MULTI source = RNAMMER::MULTI source = ArrayExpress::EG [species pythium_ultimum] taxonomy_id = 65071 taxonomy_id = 431595 aliases = pythium_ultimum source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RefSeq_dna::MULTI-protozoa source = RefSeq_peptide::MULTI-protozoa source = PHIbase::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species gibberella_moniliformis] taxonomy_id = 117187 taxonomy_id = 334819 aliases = source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = PHIbase::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species hyaloperonospora_arabidopsidis] taxonomy_id = 559515 taxonomy_id = 272952 taxonomy_id = 123356 aliases = Peronospora arabidopsidis , Hyaloperonospora arabidopsidis , Hyaloperonospora arabidopsidis Emoy2 ,Hyaloperonospora arabidopsidis East Malling Oystese 2, Hyaloperonospora parasitica source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-protozoa source = RefSeq_peptide::MULTI-protozoa source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::MULTI source = TRNASCAN_SE::MULTI source = RNAMMER::MULTI source = PHIbase::MULTI source = ArrayExpress::EG [species neurospora_crassa] taxonomy_id = 5141 taxonomy_id = 367110 aliases = neurosporacrassa, ncrassa, Neurospora crassa, Neurospora crassa OR74A source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species ustilago_maydis] taxonomy_id = 237631 taxonomy_id = 5270 aliases = ustilagomaydis, umaydis, Ustilago maydis, Ustilago maydis 521 source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = PHIbase::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species puccinia_triticina] taxonomy_id = 208348 taxonomy_id = 630390 aliases = pucciniatriticina, ptriticina, Puccinia triticina, Puccinia triticina 1-1 BBBD Race 1 source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = PHIbase::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species bos_taurus] taxonomy_id = 9913 aliases = bostaurus, btaurus, cow source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::bos_taurus source = RefSeq_peptide::bos_taurus source = UniGene::bos_taurus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species caenorhabditis_elegans] taxonomy_id = 6239 aliases = caenorhabditiselegans, celegans, elegans source = EntrezGene::MULTI source = GO::caenorhabditis_elegans source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = UniGene::caenorhabditis_elegans source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = wormbase::caenorhabditis_elegans source = ArrayExpress::MULTI [species callithrix_jacchus] taxonomy_id = 9483 aliases = Marmoset, marmoset, white-tufted-ear marmoset, callithrixjacchus, callithrix_jacchus source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species canis_familiaris] taxonomy_id = 9615 aliases = canisfamiliaris, cfamiliaris, dog, doggy source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::canis_familiaris source = RefSeq_peptide::canis_familiaris source = UniGene::canis_familiaris source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species ciona_intestinalis] taxonomy_id = 7719 aliases = cintestinalis, cionaintestinalis, seasquirt source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_other source = RefSeq_peptide::MULTI-vertebrate_other source = RefSeq_peptide::MULTI-invertebrate source = UniGene::ciona_intestinalis source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = cint_aniseed_v1::ciona_intestinalis source = cint_jgi_v1::ciona_intestinalis source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species ciona_savignyi] taxonomy_id = 51511 aliases = ciona_savi, csav, savi source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_other source = RefSeq_peptide::MULTI-invertebrate source = RefSeq_peptide::MULTI-vertebrate_other source = UniGene::ciona_savignyi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species culex_quinquefasciatus] taxonomy_id = 7176 aliases = cpipiens, culex, culexpipiens, culex quinquefasciatus, cquinquefasciatus, culexquinquefasciatus source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = UniGene::culex_quinquefasciatus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI #source = ncRNA::culex_quinquefasciatus source = ImmunoDB::culex_quinquefasciatus source = VB_External_Description::culex_quinquefasciatus source = VB_RNA_Description::culex_quinquefasciatus source = VB_Community_Annotation::culex_quinquefasciatus source = VB_Community_Annotation_Synonym::culex_quinquefasciatus source = PUBMED::culex_quinquefasciatus source = ArrayExpress::EG [species danio_rerio] taxonomy_id = 7955 aliases = danio, daniorerio, drerio, zebrafish source = EntrezGene::MULTI source = GO::danio_rerio source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::danio_rerio source = RefSeq_peptide::danio_rerio source = UniGene::danio_rerio source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = ZFIN_ID::danio_rerio#01 source = ZFIN_ID::danio_rerio#02 source = ZFIN_ID::danio_rerio#03 source = RFAM::MULTI source = miRBase::MULTI source = ZFIN_ID_curated_transcript::danio_rerio source = ArrayExpress::MULTI [species dasypus_novemcinctus] taxonomy_id = 9361 aliases = armadillo, dasypusnovemcinctus, dnovemcinctus source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species dictyostelium_discoideum] taxonomy_id = 366501 taxonomy_id = 44689 aliases = dictyostelium, dictyostelium_discoideum,Slime_mold source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-protozoa source = RefSeq_peptide::MULTI-protozoa source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species dipodomys_ordii] taxonomy_id = 10020 aliases = kangaroorat, roorat source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species drosophila_melanogaster] taxonomy_id = 7227 aliases = dmelanogaster, drosophila, drosophilamelanogaster source = EntrezGene::MULTI source = Interpro::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = UniParc::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = GO::MULTI source = GO::drosophila_melanogaster source = goslim_goa::EG source = InterproGO::MULTI source = ArrayExpress::EG source = flybase_gene_id::drosophila_melanogaster [species drosophila_pseudoobscura] taxonomy_id = 7237 aliases = dpseudoobscura, drosophila, drosophilapseudoobscura source = EntrezGene::MULTI source = Interpro::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = UniParc::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = ArrayExpress::EG source = flybase_gene_id::drosophila_pseudoobscura [species drosophila_grimshawi] taxonomy_id = 7222 aliases = dgrimshawi, drosophila, drosophilagrimshawi source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = Interpro::MULTI source = InterproGO::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = flybase_gene_id::drosophila_grimshawi source = MEROPS::drosophila_grimshawi source = ArrayExpress::EG [species drosophila_willistoni] taxonomy_id = 7260 aliases = dwillistoni, drosophila, drosophilawillistoni source = EntrezGene::MULTI source = Interpro::MULTI source = InterproGO::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI #source = Uniprot/SPTREMBL::drosophila_melanogaster #source = Uniprot/SWISSPROT::drosophila_willistoni #source = Uniprot/Varsplic::MULTI??? source = flybase_gene_id::drosophila_willistoni source = ArrayExpress::EG [species drosophila_ananassae] taxonomy_id = 7217 aliases = dananassae, drosophila, drosophilaananassae source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = Interpro::MULTI source = InterproGO::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = flybase_gene_id::drosophila_ananassae source = ArrayExpress::EG [species drosophila_yakuba] taxonomy_id = 7245 aliases = dyakuba, drosophila, drosophilayakuba source = EntrezGene::MULTI source = Interpro::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = flybase_gene_id::drosophila_yakuba source = ArrayExpress::EG [species drosophila_simulans] taxonomy_id = 7240 aliases = dsimulans, drosophila, drosophilasimulans source = EntrezGene::MULTI source = Interpro::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = UniParc::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = ArrayExpress::EG source = flybase_gene_id::drosophila_simulans [species drosophila_sechellia] taxonomy_id = 7238 aliases = dsechellia, drosophila, drosophilasechellia source = EntrezGene::MULTI source = Interpro::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = flybase_gene_id::drosophila_sechellia source = EPD::drosophila_sechellia source = ArrayExpress::EG [species drosophila_erecta] taxonomy_id = 7220 aliases = derecta, drosophila, drosophilaerecta source = EntrezGene::MULTI source = Interpro::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = flybase_gene_id::drosophila_erecta source = MEROPS::drosophila_erecta source = ArrayExpress::EG [species drosophila_persimilis] taxonomy_id = 7234 aliases = dpersimilis, drosophila, drosophilapersimilis source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = flybase_gene_id::drosophila_persimilis source = ArrayExpress::EG [species drosophila_mojavensis] taxonomy_id = 7230 aliases = dmojavensis, drosophila, drosophilamojavensis source = EntrezGene::MULTI source = Interpro::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = flybase_gene_id::drosophila_mojavensis source = EPD::drosophila_mojavensis source = ArrayExpress::EG [species daphnia_pulex] taxonomy_id = 6669 aliases = daphnia pulex,dpulex,common water flea, source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::MULTI source = TRNASCAN_SE::MULTI source = RNAMMER::MULTI source = ArrayExpress::EG [species drosophila_virilis] taxonomy_id = 7244 aliases = dvirilis, drosophila, drosophilavirilis source = EntrezGene::MULTI source = Interpro::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = flybase_gene_id::drosophila_virilis source = EPD::drosophila_virilis source = MEROPS::drosophila_virilis source = ArrayExpress::EG #source = TF::drosophila_virilis #source = GLEANR::drosophila_virilis #source = GPCR::drosophila_virilis [species echinops_telfairi] taxonomy_id = 9371 aliases = echinopstelfairi, etelfairi, tenrec source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species erinaceus_europaeus] taxonomy_id = 9365 aliases = hedgehog source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian #source = UniGene::erinaceus_europaeus ## unigene source not available for this species source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species equus_caballus] taxonomy_id = 9796 aliases = horse source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::equus_caballus source = RefSeq_peptide::equus_caballus source = UniGene::equus_caballus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species felis_catus] taxonomy_id = 9685 aliases = cat, fcatus, feliscatus, moggy, tiddles source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species gallus_gallus] taxonomy_id = 9031 aliases = chick, chicken, gallusgallus, ggallus source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::gallus_gallus source = RefSeq_peptide::gallus_gallus source = UniGene::gallus_gallus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species gasterosteus_aculeatus] taxonomy_id = 69293 aliases = gaculeatus, gasterosteusaculeatus, stickleback source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_other source = RefSeq_peptide::MULTI-vertebrate_other source = UniGene::gasterosteus_aculeatus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species gorilla_gorilla] taxonomy_id = 9593 aliases = gorilla source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species homo_sapiens] taxonomy_id = 9606 aliases = homosapiens, hsapiens, human source = CCDS::homo_sapiens source = DBASS5::homo_sapiens source = DBASS3::homo_sapiens source = EntrezGene::MULTI source = GO::homo_sapiens source = goslim_goa::MULTI source = HPA::homo_sapiens source = InterproGO::MULTI source = HGNC::homo_sapiens source = HGNC::homo_sapiens#01 source = HGNC::homo_sapiens#02 source = Interpro::MULTI source = MIM::homo_sapiens source = MIM2GENE::homo_sapiens source = Orphanet::homo_sapiens source = RefSeq_dna::homo_sapiens source = RefSeq_dna::homo_sapiens#01 source = RefSeq_peptide::homo_sapiens source = RefSeq_import::otherfeatures source = UniGene::homo_sapiens source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = miRBase::MULTI source = RFAM::MULTI source = UCSC::homo_sapiens source = HGNC_curated_transcript::homo_sapiens source = ArrayExpress::MULTI [species ixodes_scapularis] taxonomy_id = 6945 aliases = ixodes, ixodesscapularis, ixodes scapularis source = VB_Community_Annotation::ixodes_scapularis source = VB_External_Description::ixodes_scapularis source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = UniGene::ixodes_scapularis source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = PUBMED::ixodes_scapularis source = ArrayExpress::EG [species latimeria_chalumnae] taxonomy_id = 7897 aliases = coelacanth, lchalumnae, living fossil, lamineria source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-vertebrate_other source = RefSeq_peptide::MULTI-vertebrate_other source = ArrayExpress::MULTI [species loxodonta_africana] taxonomy_id = 9785 aliases = elephant, lafricana, loxodontaafricana source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = ArrayExpress::MULTI [species macaca_mulatta] taxonomy_id = 9544 aliases = macaque, rhesus, rhesus macaque, rmacaque source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = UniGene::macaca_mulatta source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species macropus_eugenii] taxonomy_id = 9315 aliases = wallaby, macropus, tammar wallaby, macropuseugenii source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian #source = UniGene::macropus_eugenii source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species meleagris_gallopavo] taxonomy_id = 9103 aliases = turkey, common turkey, meleagris gallopavo, mgallopavo source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::meleagris_gallopavo source = RefSeq_peptide::meleagris_gallopavo source = UniGene::meleagris_gallopavo source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species microcebus_murinus] taxonomy_id = 30608 aliases = mouse lemur, mmur, mmurinus, mouse_lemur, microcebus murinus source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian #source = UniGene::microcebus_murinus ## unigene source not available for this species source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = Uniprot::EMBL source = UniProt::protein_id source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species monodelphis_domestica] taxonomy_id = 13616 aliases = mdomestica, mono, monodelphis, monodelphisdomestica, opossum, possum source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = UniGene::monodelphis_domestica source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species mus_musculus] taxonomy_id = 10090 aliases = mmusculus, mouse, musmusculus source = CCDS::mus_musculus source = EntrezGene::MULTI source = GO::mus_musculus source = goslim_goa::MULTI source = InterproGO::MULTI source = IMGT/GENE_DB::mus_musculus source = IKMCs_KOs::mus_musculus source = MGI::mus_musculus#01 source = MGI::mus_musculus#02 source = MGI::mus_musculus#03 source = MGI::mus_musculus#05 source = MGI_curated_transcript::mus_musculus source = Interpro::MULTI source = RefSeq_dna::mus_musculus source = RefSeq_dna::mus_musculus#01 source = RefSeq_peptide::mus_musculus source = RefSeq_import::otherfeatures source = UniGene::mus_musculus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = UCSC::mus_musculus source = Fantom::mus_musculus source = ArrayExpress::MULTI [species mustela_putorius_furo] taxonomy_id = 9669 aliases = mputorius, ferret, mfuro source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian #source = UniGene::mustela_putorius_furo ## unigene source not available for this species source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species myotis_lucifugus] taxonomy_id = 59463 aliases = little brown bat, microbat source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian #source = UniGene::myotis_lucifugus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species ochotona_princeps] taxonomy_id = 9978 aliases = pika, American pika source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species ornithorhynchus_anatinus] taxonomy_id = 9258 aliases = duckbilled_platypus, duckbilledplatypus, ornithorhynchusanatinus, platypus source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = UniGene::ornithorhynchus_anatinus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = Oxford_FGU_Oa_tscript::ornithorhynchus_anatinus source = Oxford_FGU_Oa_gene::ornithorhynchus_anatinus source = Platypus_olfactory_receptor::ornithorhynchus_anatinus source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species oryctolagus_cuniculus] taxonomy_id = 9986 aliases = ocuniculus, oryctolaguscuniculus, rabbit source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = UniGene::oryctolagus_cuniculus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species oryzias_latipes] taxonomy_id = 8090 aliases = japanese medaka, japanese ricefish, medaka source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_other source = RefSeq_peptide::MULTI-vertebrate_other source = UniGene::oryzias_latipes source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species otolemur_garnettii] taxonomy_id = 30611 aliases = bushbaby, ogarnetti, otolemur, otogar, galago source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian #source = UniGene::otolemur_garnettii ## unigene source not available for this species source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = Uniprot::EMBL source = UniProt::protein_id source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species pan_troglodytes] taxonomy_id = 9598 aliases = pantroglodytes, ptroglodytes, chimpanzee, chimp source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::pan_troglodytes source = RefSeq_peptide::pan_troglodytes source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species papio_anubis] taxonomy_id = 9555 aliases = papio_anubis, panubis, panu, papanu source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::papio_anubis source = RefSeq_peptide::papio_anubis source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species pediculus_humanus] taxonomy_id = 121225 aliases = pediculushumanus, pediculus, phumanus source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = UniGene::aedes_aegypti source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = ArrayExpress::MULTI [species pongo_abelii] taxonomy_id = 9601 aliases = pongopygmaeus, pongo pygmaeus, ppygmaeus, orangutan, orang, pongo_abelii, pabelii source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::pongo_abelii source = RefSeq_peptide::pongo_abelii source = UniGene::pongo_abelii source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species procavia_capensis] taxonomy_id = 9813 aliases = rockhyrax, hyrax, procap source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species pteropus_vampyrus] taxonomy_id = 132908 aliases = megabat, pvampyrus, largeflyingfox source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species rattus_norvegicus] taxonomy_id = 10116 aliases = rat, rattusnorvegicus, rnorvegicus source = EntrezGene::MULTI source = GO::rattus_norvegicus source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RGD::rattus_norvegicus source = RefSeq_dna::rattus_norvegicus source = RefSeq_peptide::rattus_norvegicus source = UniGene::rattus_norvegicus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species saccharomyces_cerevisiae] taxonomy_id = 4932 taxonomy_id = 559292 aliases = saccharomyces, saccharomycescerevisiae, scerevisiae, yeast source = EntrezGene::MULTI source = GO::saccharomyces_cerevisiae source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = SGD::saccharomyces_cerevisiae source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI #source = Uniprot/SWISSPROT::DIRECT source = ArrayExpress::MULTI [species schizosaccharomyces_pombe] taxonomy_id = 4896 taxonomy_id = 284812 aliases = schizosaccharomyces, schizosaccharomycespombe, spombe, fission yeast source = EntrezGene::MULTI #source = GO::schizosaccharomyces_pombe source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = PomBase::schizosaccharomyces_pombe source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ArrayExpress::EG [species sorex_araneus] taxonomy_id = 42254 aliases = sorex_araneus, ground_shrew, sorex araneus, saraneus, shrew source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian #source = UniGene::sorex_araneus ## unigene source not available for this species source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = Uniprot::EMBL source = UniProt::protein_id source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species phaeodactylum_tricornutum] taxonomy_id = 2850 taxonomy_id = 556484 aliases = diatom,phaeodactlyum_tricornutum,phaeodactlyum, source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-complete source = RefSeq_peptide::MULTI-complete source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species plasmodium_vivax] taxonomy_id = 5855 aliases = plasmodium_vivax, source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-complete source = RefSeq_peptide::MULTI-complete source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species plasmodium_falciparum] taxonomy_id = 5833 taxonomy_id = 36329 aliases = plasmodium_falciparum,plasmodium_falciparum_3D7, source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-complete source = RefSeq_peptide::MULTI-complete source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species plasmodium_knowlesi] taxonomy_id = 5851 aliases = plasmodium_knowlesi, source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-complete source = RefSeq_peptide::MULTI-complete source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species plasmodium_chabaudi] taxonomy_id = 5825 aliases = plasmodium_chabaudi, source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-complete source = RefSeq_peptide::MULTI-complete source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species plasmodium_berghei] taxonomy_id = 5823 taxonomy_id = 5821 aliases = plasmodium_berghei,plasmodium_berghei_ANKA source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-complete source = RefSeq_peptide::MULTI-complete source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species thalassiosira_pseudonana] taxonomy_id = 35128 taxonomy_id = 296543 aliases = diatom,thalassiosira_pseudonana,thalassiosira source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-complete source = RefSeq_peptide::MULTI-complete source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species ictidomys_tridecemlineatus] taxonomy_id = 43179 aliases = squirrel, thirteen-lined ground squirrel, source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian #source = UniGene::ictidomys_tridecemlineatus ## unigene source not available for this species source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species taeniopygia_guttata] taxonomy_id = 59729 aliases = zebrafinch, zebra_finch, taeniopygiaguttata, tguttata, poephila_guttata, taenopygia_guttata, poephilaguttata, taenopygiaguttata source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_other source = RefSeq_peptide::MULTI-vertebrate_other source = UniGene::taeniopygia_guttata source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species takifugu_rubripes] taxonomy_id = 31033 aliases = frubripes, fugu, fugu_rubripes, fugurubripes, pufferfish source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_other source = RefSeq_peptide::MULTI-vertebrate_other source = UniGene::takifugu_rubripes source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species tarsius_syrichta] taxonomy_id = 9478 aliases = tarsier, bonyfingers source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species tetraodon_nigroviridis] taxonomy_id = 99883 aliases = tetraodon, tnigroviridis, tnig, tetraodon_nigroviridis source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_other source = RefSeq_peptide::MULTI-vertebrate_other #source = UniGene::tetraodon_nigroviridis ## unigene directory does not contain any data for tetraodon source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = RFAM::MULTI source = miRBase::MULTI #source = Genoscope_pred_gene::tetraodon_nigroviridis ## genoscope sources not available yet #source = Genoscope_pred_transcript::tetraodon_nigroviridis #source = Genoscope_pred_translation::tetraodon_nigroviridis #source = Genoscope_annotated_gene::tetraodon_nigroviridis source = ArrayExpress::MULTI [species tupaia_belangeri] taxonomy_id = 37347 aliases = treeshrew source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian #source = UniGene::tupaia_belangeri ## unigene source not available for this species source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species tursiops_truncatus] taxonomy_id = 9739 aliases = dolphin, bottlenose_dolphi source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species vicugna_pacos] taxonomy_id = 30538 aliases = alpaca, lama_pacos source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species choloepus_hoffmanni] taxonomy_id = 9358 aliases = sloth source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species xenopus_tropicalis] taxonomy_id = 8364 aliases = pipid, pipidfrog, xenopus, xenopustropicalis, xtropicalis source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_other source = RefSeq_peptide::MULTI-vertebrate_other source = UniGene::xenopus_tropicalis source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = Xenopus_Jamboree::xenopus_tropicalis source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species xiphophorus_maculatus] taxonomy_id = 8083 aliases = xiphophorus, xmaculatus, platyfish source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_other source = RefSeq_peptide::MULTI-vertebrate_other #source = UniGene::xiphophorus_maculatus ## unigene source not available for this species source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species magnaporthe_oryzae] taxonomy_id = 242507 taxonomy_id = 148305 aliases = rice blast, magnaporthe, magnaportheoryzae, moryzae source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = PHIbase::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species phytophthora_infestans] taxonomy_id = 403677 taxonomy_id = 4787 aliases = phytophthora_infestans source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-complete source = RefSeq_peptide::MULTI-complete source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = PHIbase::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species phytophthora_sojae] taxonomy_id = 67593 aliases = phytophthora_sojae source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-complete source = RefSeq_peptide::MULTI-complete source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = PHIbase::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species phytophthora_ramorum] taxonomy_id = 164328 aliases = phytophthora_ramorum source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-complete source = RefSeq_peptide::MULTI-complete source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = PHIbase::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species nectria_haematococca] taxonomy_id = 140110 taxonomy_id = 660122 aliases = source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = PHIbase::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = ArrayExpress::EG [species fusarium_oxysporum] taxonomy_id = 426428 taxonomy_id = 59765 taxonomy_id = 5507 aliases = fusarium_oxysporum, fusarium oxysporum, Fusarium oxysporum f. sp. lycopersici 4287, Fusarium oxysporum f. sp. lycopersici source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = PHIbase::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species tuber_melanosporum] taxonomy_id = 656061 taxonomy_id = 39416 aliases = source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ArrayExpress::EG [species phaeosphaeria_nodorum] taxonomy_id = 321614 taxonomy_id = 13684 aliases = source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = PHIbase::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ArrayExpress::EG [species ashbya_gossypii] taxonomy_id = 284811 taxonomy_id = 33169 aliases = source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = PHIbase::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ArrayExpress::EG [species gibberella_zeae] taxonomy_id = 229533 taxonomy_id = 5518 aliases = gibberella_zeae, gibberella zeae, gibberella zeae PH1 source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = PHIbase::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = misc_EG::EG source = ArrayExpress::EG [species nomascus_leucogenys] taxonomy_id = 61853 aliases = nomascus_leucogenys, gibbon, Gibbon source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian #source = UniGene::nomascus_leucogenys ## unigene source not available for species source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI [species sus_scrofa] taxonomy_id = 9823 aliases = pig, sscrofa, susscr, sscr, sus scrofa source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::sus_scrofa source = RefSeq_peptide::sus_scrofa source = UniGene::sus_scrofa source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = Uniprot/SWISSPROT::DIRECT source = UniProt::protein_id source = Uniprot::EMBL source = UniParc::MULTI source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI source = PIGGY_curated_transcript::sus_scrofa source = PIGGY::sus_scrofa [species vitis_vinifera] taxonomy_id = 29760 aliases = grape, vitis vinifera, vvinifera source = EntrezGene::MULTI source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_peptide::MULTI-Plants source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = goslim_goa::EG source = ArrayExpress::EG source = UniParc::MULTI [species glycine_max] taxonomy_id = 3847 aliases = soybean, glycine max, glycinemax source = EntrezGene::MULTI source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_peptide::MULTI-Plants source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = goslim_goa::EG source = ArrayExpress::EG source = PHYTOZOME_GMAX_GENE::glycine_max source = UniParc::MULTI [species oryza_glaberrima] taxonomy_id = 4538 aliases = african rice, oryza glaberrima, oryzaglaberrima source = EntrezGene::MULTI source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_peptide::MULTI-Plants source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = goslim_goa::EG source = ArrayExpress::EG source = UniParc::MULTI [species brassica_rapa] taxonomy_id = 51351 aliases = Brassica rapa, Brassica rapa subsp. pekinensis source = EntrezGene::MULTI source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_peptide::MULTI-Plants source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = goslim_goa::EG source = ArrayExpress::EG source = UniParc::MULTI [species oryza_brachyantha] taxonomy_id = 4533 aliases = Oryza brachyantha source = EntrezGene::MULTI source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_peptide::MULTI-Plants source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = goslim_goa::EG source = ArrayExpress::EG source = UniParc::MULTI [species setaria_italica] taxonomy_id = 4555 aliases = Setaria italica source = EntrezGene::MULTI source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_peptide::MULTI-Plants source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = goslim_goa::EG source = ArrayExpress::EG source = UniParc::MULTI [species solanum_lycopersicum] taxonomy_id = 4081 aliases = Solanum lycopersicum, Lycopersicon esculentum source = EntrezGene::MULTI source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_peptide::MULTI-Plants source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = goslim_goa::EG source = ArrayExpress::EG source = UniParc::MULTI [species solanum_tuberosum] taxonomy_id = 4113 aliases = Solanum tuberosum source = EntrezGene::MULTI source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_peptide::MULTI-Plants source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = ncRNA_EG::EG source = goslim_goa::EG source = ArrayExpress::EG source = PGSC_GENE::solanum_tuberosum source = UniParc::MULTI [species medicago_truncatula] taxonomy_id = 3880 aliases = Medicago truncatula, barrel medic, Medicago tribuloides source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species musa_acuminata] taxonomy_id = 214687 aliases = Musa acuminata source = EntrezGene::MULTI source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_peptide::MULTI-Plants source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = goslim_goa::EG source = ArrayExpress::EG source = UniParc::MULTI [species hordeum_vulgare] taxonomy_id = 112509 aliases = Hordeum vulgare, barley source = EntrezGene::MULTI source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_peptide::MULTI-Plants source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = goslim_goa::EG source = ArrayExpress::EG source = UniParc::MULTI source = RFAM::EG source = miRBase::MULTI source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI [species arabidopsis_lyrata] taxonomy_id = 81972 aliases = Arabidopsis lyrata,alyrata,arabidopsislyrata,lyrate rockcress source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species arabidopsis_thaliana] taxonomy_id = 3702 aliases = Arabidopsis thaliana,athaliana,arabidopsisthaliana,thale cress,thale-cress,mouse-ear cress source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = UniGene::arabidopsis_thaliana source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species brachypodium_distachyon] taxonomy_id = 15368 aliases = Brachypodium distachyon,bdistachyon,brachypodiumdistachyon source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = UniGene::brachypodium_distachyon source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species chlamydomonas_reinhardtii] taxonomy_id = 3055 taxonomy_id = 906914 aliases = Chlamydomonas reinhardtii,creinhardtii,chlamydomonasreinhardtii,green algae source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = UniGene::chlamydomonas_reinhardtii source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species cyanidioschyzon_merolae] taxonomy_id = 45157 aliases = Cyanidioschyzon merolae,cmerolae,cyanidioschyzonmerolae,red algae source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = miRBase::MULTI source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species leersia_perrieri] taxonomy_id = 77586 aliases = Leersia perrieri,lperrieri,leersiaperrieri source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species oryza_barthii] taxonomy_id = 65489 aliases = Oryza barthii,obarthii,oryzabarthii,African wild rice source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species oryza_glumaepatula] taxonomy_id = 40148 aliases = Oryza glumaepatula,oglumaepatula,oryzaglumaepatula source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species oryza_granulata] taxonomy_id = 110450 aliases = Oryza granulata,ogranulata,oryzagranulata source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species oryza_longistaminata] taxonomy_id = 4528 aliases = Oryza longistaminata,olongistaminata,oryzalongistaminata,red rice source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species oryza_meridionalis] taxonomy_id = 40149 aliases = Oryza meridionalis,omeridionalis,oryzameridionalis source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI #[species oryza_minutabb] #taxonomy_id = 63629 #aliases = Oryza minutabb,ominutabb,oryzaminutabb #source = ArrayExpress::EG #source = EntrezGene::MULTI #source = GO::MULTI #source = goslim_goa::EG #source = Interpro::MULTI #source = InterproGO::MULTI #source = miRBase::MULTI #source = RefSeq_dna::MULTI-Plants #source = RefSeq_mRNA_predicted::MULTI #source = RefSeq_peptide::MULTI-Plants #source = RFAM::EG #source = RNAMMER::MULTI #source = TRNASCAN_SE::MULTI #source = UniParc::MULTI #source = Uniprot/SPTREMBL::MULTI #source = Uniprot/SWISSPROT::MULTI # #[species oryza_minutacc] #taxonomy_id = 63629 #aliases = Oryza minutacc,ominutacc,oryzaminutacc #source = ArrayExpress::EG #source = EntrezGene::MULTI #source = GO::MULTI #source = goslim_goa::EG #source = Interpro::MULTI #source = InterproGO::MULTI #source = miRBase::MULTI #source = RefSeq_dna::MULTI-Plants #source = RefSeq_mRNA_predicted::MULTI #source = RefSeq_peptide::MULTI-Plants #source = RFAM::EG #source = RNAMMER::MULTI #source = TRNASCAN_SE::MULTI #source = UniParc::MULTI #source = Uniprot/SPTREMBL::MULTI #source = Uniprot/SWISSPROT::MULTI [species oryza_nivara] taxonomy_id = 4536 aliases = Oryza nivara,onivara,oryzanivara source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species oryza_officinalis] taxonomy_id = 4535 aliases = Oryza officinalis,oofficinalis,oryzaofficinalis source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species oryza_punctata] taxonomy_id = 4537 aliases = Oryza punctata,opunctata,oryzapunctata source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI #[species oryza_rufipogon3s] #taxonomy_id = 4529 #aliases = Oryza rufipogon3s,orufipogon3s,oryzarufipogon3s,red rice,common wild rice #source = ArrayExpress::EG #source = EntrezGene::MULTI #source = GO::MULTI #source = goslim_goa::EG #source = Interpro::MULTI #source = InterproGO::MULTI #source = miRBase::MULTI #source = RefSeq_dna::MULTI-Plants #source = RefSeq_mRNA_predicted::MULTI #source = RefSeq_peptide::MULTI-Plants #source = RFAM::EG #source = RNAMMER::MULTI #source = TRNASCAN_SE::MULTI #source = UniParc::MULTI #source = Uniprot/SPTREMBL::MULTI #source = Uniprot/SWISSPROT::MULTI # #[species oryza_rufipogon_fpc] #taxonomy_id = 4529 #aliases = Oryza rufipogon,orufipogon,oryzarufipogon,red rice,common wild rice #source = ArrayExpress::EG #source = EntrezGene::MULTI #source = GO::MULTI #source = goslim_goa::EG #source = Interpro::MULTI #source = InterproGO::MULTI #source = miRBase::MULTI #source = RefSeq_dna::MULTI-Plants #source = RefSeq_mRNA_predicted::MULTI #source = RefSeq_peptide::MULTI-Plants #source = RFAM::EG #source = RNAMMER::MULTI #source = TRNASCAN_SE::MULTI #source = UniParc::MULTI #source = Uniprot/SPTREMBL::MULTI #source = Uniprot/SWISSPROT::MULTI [species oryza_indica] taxonomy_id = 39946 aliases = Oryza sativa,osativa,oryzasativa,rice,Indian rice source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species oryza_sativa_japonica] taxonomy_id = 39947 aliases = Oryza sativa,osativa,oryzasativa,rice,Japanese rice source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species physcomitrella_patens] taxonomy_id = 145481 aliases = Physcomitrella patens,ppatens,physcomitrellapatens,moss,Physcomitrella patens subsp. patens source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI #source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniGene::physcomitrella_patens source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species populus_trichocarpa] taxonomy_id = 3694 aliases = Populus trichocarpa,ptrichocarpa,populustrichocarpa,poplar,black cottonwood source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniGene::populus_trichocarpa source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species selaginella_moellendorffii] taxonomy_id = 88036 aliases = Selaginella moellendorffii,smoellendorffii,selaginellamoellendorffii,club moss source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI #source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniGene::selaginella_moellendorffii source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species sorghum_bicolor] taxonomy_id = 4558 taxonomy_id = 91525 taxonomy_id = 171959 aliases = Sorghum bicolor,sbicolor,sorghumbicolor,sorghum,milo,broomcorn,shattercane,chicken cornSorghum bicolor subsp. verticilliflorum,Sorghum bicolor subsp. x drummondii source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants source = RFAM::EG source = RNAMMER::MULTI source = TRNASCAN_SE::MULTI source = UniGene::sorghum_bicolor source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species zea_mays] taxonomy_id = 4577 taxonomy_id = 112001 taxonomy_id = 381124 taxonomy_id = 334825 taxonomy_id = 4579 taxonomy_id = 76912 aliases = Zea mays,zmays,zeamays,corn,maize source = ArrayExpress::EG source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = Interpro::MULTI source = InterproGO::MULTI source = miRBase::MULTI source = RefSeq_dna::MULTI-Plants source = RefSeq_mRNA_predicted::MULTI source = RefSeq_peptide::MULTI-Plants #source = RFAM::EG #source = RNAMMER::MULTI #source = TRNASCAN_SE::MULTI source = UniGene::zea_mays source = UniParc::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI [species amphimedon_queenslandica] taxonomy_id = 400682 aliases = sponge, aqueenslandica, amphimedon_queenslandica source = EntrezGene::MULTI source = goslim_goa::EG source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::amphimedon_queenslandica source = RefSeq_peptide::amphimedon_queenslandica source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ArrayExpress::EG [species atta_cephalotes] taxonomy_id = 12957 aliases = ant, acephalotes, atta_cephalotes source = EntrezGene::MULTI source = goslim_goa::EG source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ArrayExpress::EG [species bombyx_mori] taxonomy_id = 7091 aliases = silkworm, silk moth, bmori, bombyx_mori source = EntrezGene::MULTI source = goslim_goa::EG source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = UniGene::bombyx_mori source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ArrayExpress::EG [species nematostella_vectensis] taxonomy_id = 45351 aliases = anemone, sea anemone, nvectensis, nematostella_vectensis source = EntrezGene::MULTI source = goslim_goa::EG source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = UniGene::nematostella_vectensis source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ArrayExpress::EG [species strongylocentrotus_purpuratus] taxonomy_id = 7668 aliases = sea urchin, spurpuratus, strongylocentrotus_purpuratus source = EntrezGene::MULTI source = goslim_goa::EG source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::strongylocentrotus_purpuratus source = RefSeq_peptide::strongylocentrotus_purpuratus source = UniGene::strongylocentrotus_purpuratus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ArrayExpress::EG [species tribolium_castaneum] taxonomy_id = 7070 aliases = red flour beetle, tcastaneum, tribolium_castaneum source = EntrezGene::MULTI source = goslim_goa::EG source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::tribolium_castaneum source = RefSeq_peptide::tribolium_castaneum source = UniGene::tribolium_castaneum source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ArrayExpress::EG [species gaeumannomyces_graminis] taxonomy_id = 644352 aliases = ggraminis, gaeumannomyces_graminis, gaeumannomyces graminis, gaeumannomyces graminis var. tritici R3-111a-1 source = EntrezGene::MULTI source = goslim_goa::EG source = GO::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = PHIbase::MULTI source = BROAD_Magnaporthe_DB::MULTI source = ArrayExpress::EG [species trichinella_spiralis] taxonomy_id = 6334 aliases = trichinella_spiralis source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-complete source = RefSeq_peptide::MULTI-complete source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ArrayExpress::EG [species nasonia_vitripennis] taxonomy_id = 7425 aliases = nasonia_vitripennis, nvitripennis, jewel wasp source = EntrezGene::MULTI source = GO::MULTI source = goslim_goa::EG source = InterproGO::MULTI source = Interpro::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = ArrayExpress::EG