diff --git a/.gitignore b/.gitignore
index 5e63ec93c689100bfab0c63fc628a69df3949fed..a5852e9def21618db3fa14929cd7bb61e9716085 100644
--- a/.gitignore
+++ b/.gitignore
@@ -43,3 +43,8 @@ seqtools.blg
# This is a file generated by blixem. It does not seem to be used for anything so
# will probably be removed at some point:
myoutput
+
+# Build stuff to be ignored
+#
+src/build
+!src/build/release_docs
diff --git a/LICENCE b/LICENCE
new file mode 100644
index 0000000000000000000000000000000000000000..53aa2d7dd405fa1c78cdded8b1f4168a73538c90
--- /dev/null
+++ b/LICENCE
@@ -0,0 +1,226 @@
+Seqtools is free software distributed under the following copyright and Licence
+notices:
+
+
+ Copyright (c) 2006-2017: Genome Research Ltd.
+
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+
+ Apache License
+ Version 2.0, January 2004
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+ZMap Subcomponents
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diff --git a/src/COPYING b/src/COPYING
index 94a9ed024d3859793618152ea559a168bbcbb5e2..7f73cdc6eb1c86686a3dfe3fd2d91b514737c7aa 100644
--- a/src/COPYING
+++ b/src/COPYING
@@ -1,674 +1,19 @@
- GNU GENERAL PUBLIC LICENSE
- Version 3, 29 June 2007
+Seqtools is free software distributed under the following copyright and Licence
+notices:
- Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
- Everyone is permitted to copy and distribute verbatim copies
- of this license document, but changing it is not allowed.
- Preamble
+Copyright (c) 2006-2017: Genome Research Ltd.
- The GNU General Public License is a free, copyleft license for
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-or that patent license was granted, prior to 28 March 2007.
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- 12. No Surrender of Others' Freedom.
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- If conditions are imposed on you (whether by court order, agreement or
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-to collect a royalty for further conveying from those to whom you convey
-the Program, the only way you could satisfy both those terms and this
-License would be to refrain entirely from conveying the Program.
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- 13. Use with the GNU Affero General Public License.
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-under version 3 of the GNU Affero General Public License into a single
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-but the special requirements of the GNU Affero General Public License,
-section 13, concerning interaction through a network will apply to the
-combination as such.
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- 14. Revised Versions of this License.
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-be similar in spirit to the present version, but may differ in detail to
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-by the Free Software Foundation.
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- If the Program specifies that a proxy can decide which future
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-to choose that version for the Program.
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-PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
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-SUCH DAMAGES.
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- 17. Interpretation of Sections 15 and 16.
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- If the disclaimer of warranty and limitation of liability provided
-above cannot be given local legal effect according to their terms,
-reviewing courts shall apply local law that most closely approximates
-an absolute waiver of all civil liability in connection with the
-Program, unless a warranty or assumption of liability accompanies a
-copy of the Program in return for a fee.
-
- END OF TERMS AND CONDITIONS
-
- How to Apply These Terms to Your New Programs
-
- If you develop a new program, and you want it to be of the greatest
-possible use to the public, the best way to achieve this is to make it
-free software which everyone can redistribute and change under these terms.
-
- To do so, attach the following notices to the program. It is safest
-to attach them to the start of each source file to most effectively
-state the exclusion of warranty; and each file should have at least
-the "copyright" line and a pointer to where the full notice is found.
-
- <one line to give the program's name and a brief idea of what it does.>
- Copyright (C) <year> <name of author>
-
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
-
-Also add information on how to contact you by electronic and paper mail.
-
- If the program does terminal interaction, make it output a short
-notice like this when it starts in an interactive mode:
-
- <program> Copyright (C) <year> <name of author>
- This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
- This is free software, and you are welcome to redistribute it
- under certain conditions; type `show c' for details.
-
-The hypothetical commands `show w' and `show c' should show the appropriate
-parts of the General Public License. Of course, your program's commands
-might be different; for a GUI interface, you would use an "about box".
-
- You should also get your employer (if you work as a programmer) or school,
-if any, to sign a "copyright disclaimer" for the program, if necessary.
-For more information on this, and how to apply and follow the GNU GPL, see
-<http://www.gnu.org/licenses/>.
-
- The GNU General Public License does not permit incorporating your program
-into proprietary programs. If your program is a subroutine library, you
-may consider it more useful to permit linking proprietary applications with
-the library. If this is what you want to do, use the GNU Lesser General
-Public License instead of this License. But first, please read
-<http://www.gnu.org/philosophy/why-not-lgpl.html>.
diff --git a/src/RANGE_OF_YEARS_COPYRIGHT b/src/COPYRIGHT_RANGE_OF_YEARS
similarity index 100%
rename from src/RANGE_OF_YEARS_COPYRIGHT
rename to src/COPYRIGHT_RANGE_OF_YEARS
diff --git a/src/belvuApp/belvu.cpp b/src/belvuApp/belvu.cpp
index 4871584df5138232bfdcaf329555c3c82739f688..c71cbe6deb8023ff80d72044b86f3bd5d3d02af0 100644
--- a/src/belvuApp/belvu.cpp
+++ b/src/belvuApp/belvu.cpp
@@ -2,19 +2,17 @@
* Author: Erik Sonnhammer
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License2 * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/belvuApp/belvuAlignment.cpp b/src/belvuApp/belvuAlignment.cpp
index 7992f75cde2016446e5e2c97c80b3d37f5b8b381..9cf402f933cac007e038c618fde116f2d64e35d7 100644
--- a/src/belvuApp/belvuAlignment.cpp
+++ b/src/belvuApp/belvuAlignment.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2011-04-12
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/belvuApp/belvuAlignment.hpp b/src/belvuApp/belvuAlignment.hpp
index e79ebc580d6ebfe7122f762ac8481ee6fde8cd70..f55886d96036c4443e6ca6072cd0807e097750e1 100644
--- a/src/belvuApp/belvuAlignment.hpp
+++ b/src/belvuApp/belvuAlignment.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2011-04-12
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/belvuApp/belvuConsPlot.cpp b/src/belvuApp/belvuConsPlot.cpp
index 1ad39bd09d34a7e01821f60b3bdc44e02d8c4a84..6f3198e43f7d324cee4c8da94d7455673017220f 100644
--- a/src/belvuApp/belvuConsPlot.cpp
+++ b/src/belvuApp/belvuConsPlot.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2011-07-01
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/belvuApp/belvuConsPlot.hpp b/src/belvuApp/belvuConsPlot.hpp
index 50854a56ba56a2e2e105dcc2d8d669f1543ce2da..76e5400b17fef0a8d53d526ae4921398dd9f3ddb 100644
--- a/src/belvuApp/belvuConsPlot.hpp
+++ b/src/belvuApp/belvuConsPlot.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2011-07-01
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/belvuApp/belvuMain.cpp b/src/belvuApp/belvuMain.cpp
index 9baad6c06ad7536adf226707dc4895d1d08e66c0..94fa8b481a7eac13cca1eac7c15e1acfb8f7f1e1 100644
--- a/src/belvuApp/belvuMain.cpp
+++ b/src/belvuApp/belvuMain.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2011-04-06
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/belvuApp/belvuTree.cpp b/src/belvuApp/belvuTree.cpp
index c0fcaa7975984f3c2aed907836773280bda2ea75..46fb7dc9569f5c40b062978b6a2f736778c91205 100644
--- a/src/belvuApp/belvuTree.cpp
+++ b/src/belvuApp/belvuTree.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2011-05-06
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/belvuApp/belvuTree.hpp b/src/belvuApp/belvuTree.hpp
index 2ccf68115d74fdc02f036441cf9a3bdec1f7b35f..ce2957f827677a37271ba7c75c62e2b31e0454be 100644
--- a/src/belvuApp/belvuTree.hpp
+++ b/src/belvuApp/belvuTree.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2011-05-06
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/belvuApp/belvuWindow.cpp b/src/belvuApp/belvuWindow.cpp
index 29b357ec094b249fe06c415a434a10270ba23c79..98ce4e7e6aa9862d34d72a9160e4e69207125baa 100644
--- a/src/belvuApp/belvuWindow.cpp
+++ b/src/belvuApp/belvuWindow.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2011-04-11
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/belvuApp/belvuWindow.hpp b/src/belvuApp/belvuWindow.hpp
index 0a8ffa7dfc7e2852f3cf4ddee25ac23d435f8c19..4b07bd0cc4f4e6d381e611b3c84c4319d0ea81a2 100644
--- a/src/belvuApp/belvuWindow.hpp
+++ b/src/belvuApp/belvuWindow.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2011-04-11
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/belvuApp/belvu_.hpp b/src/belvuApp/belvu_.hpp
index a729353077091f1a281afb5d091cec4929876930..1abf2101c793b2e1e13f28cfa30fc96e8aa36ba8 100644
--- a/src/belvuApp/belvu_.hpp
+++ b/src/belvuApp/belvu_.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2011-03-06
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/bigpicture.cpp b/src/blixemApp/bigpicture.cpp
index b54e9457139ddc9dd2d73db2abd30a13e2fff7b2..0e7be2ce99ff92f026327c82aa762303b81ab5cf 100644
--- a/src/blixemApp/bigpicture.cpp
+++ b/src/blixemApp/bigpicture.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2009-11-23
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/bigpicture.hpp b/src/blixemApp/bigpicture.hpp
index 3720b9d15cb26eda3a94ca2cbc6b83e5e74d1a46..a2d41f3ff4adaf3890928752b5fef9818f7dce63 100644
--- a/src/blixemApp/bigpicture.hpp
+++ b/src/blixemApp/bigpicture.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2009-11-23
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/bigpicturegrid.cpp b/src/blixemApp/bigpicturegrid.cpp
index 6637bb033727dc2f2869639d6c12b0f5598dad8e..f8667897dc32a297980bca91641b11c5238eefbc 100644
--- a/src/blixemApp/bigpicturegrid.cpp
+++ b/src/blixemApp/bigpicturegrid.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2009-11-23
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/bigpicturegrid.hpp b/src/blixemApp/bigpicturegrid.hpp
index 635ddf0cca9eae6fb0bff5616ccd27e99ffcb341..cf353582c5f5ce8f52f0d37982ca4303f543e9fa 100644
--- a/src/blixemApp/bigpicturegrid.hpp
+++ b/src/blixemApp/bigpicturegrid.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2009-11-23
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/blixem_.hpp b/src/blixemApp/blixem_.hpp
index d6f7c62fd5ec4bc55144182b65445c5d91ba7800..2ac43bb706f8f94163f880f257b6e267cfeaabb4 100644
--- a/src/blixemApp/blixem_.hpp
+++ b/src/blixemApp/blixem_.hpp
@@ -2,20 +2,17 @@
* Author: Ed Griffiths, 2001-11-29
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/blxFetch.cpp b/src/blixemApp/blxFetch.cpp
index edab03e5e23c33d4ab179057d22d3bb9dfc3742e..51047b77904c1f5e411f6c91b0eabd3bbcb88c93 100644
--- a/src/blixemApp/blxFetch.cpp
+++ b/src/blixemApp/blxFetch.cpp
@@ -2,20 +2,17 @@
* Author: Ed Griffiths, 2008-06-17
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/blxFetchDb.cpp b/src/blixemApp/blxFetchDb.cpp
index ed036e632e18f603c37eb685b0089e21f4490e5f..1cd9b414df5ea77f046e8fde3e46bd195924938b 100644
--- a/src/blixemApp/blxFetchDb.cpp
+++ b/src/blixemApp/blxFetchDb.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2012-08-06
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/blxcontext.cpp b/src/blixemApp/blxcontext.cpp
index 952c2635ae9acfb8e28f9680e80e076482154225..3b7ae199fdb1db36426ea1ec8a7350de5ea47b70 100644
--- a/src/blixemApp/blxcontext.cpp
+++ b/src/blixemApp/blxcontext.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2016-04-06
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/blxcontext.hpp b/src/blixemApp/blxcontext.hpp
index 87bbc8fa79bcf2f839b70002e529bcfca39b5734..2660082a804498c1abfe21baefef473490cb50b0 100644
--- a/src/blixemApp/blxcontext.hpp
+++ b/src/blixemApp/blxcontext.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2016-04-06
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/blxdotter.cpp b/src/blixemApp/blxdotter.cpp
index 5abc2733f968734c6371c348c6f766074ec3072a..b7a29ad13db422f694f9f9849ce5f816157ce3ed 100644
--- a/src/blixemApp/blxdotter.cpp
+++ b/src/blixemApp/blxdotter.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2010-02-03
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/blxdotter.hpp b/src/blixemApp/blxdotter.hpp
index 1047723508ee3f8b3f17e89ccbf5ad7a19247f14..3c74f6efbbadccc9c5c980dfca9b00b933357e95 100644
--- a/src/blixemApp/blxdotter.hpp
+++ b/src/blixemApp/blxdotter.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2010-02-03
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/blxmain.cpp b/src/blixemApp/blxmain.cpp
index 3d7a541ff1f5e9bf555d5246d3f49f25ed6f61d0..183f6988e66bbba972c37f98c30eb8ddd5899b3f 100644
--- a/src/blixemApp/blxmain.cpp
+++ b/src/blixemApp/blxmain.cpp
@@ -2,20 +2,17 @@
* Author: Erik Sonnhammer, 1999-08-26
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/blxpanel.cpp b/src/blixemApp/blxpanel.cpp
index f5a359ae3c211d1599f13599f4892590c3ff2ef2..2e600ea93e25d766c9cc0262abc46bbd7d36ccad 100644
--- a/src/blixemApp/blxpanel.cpp
+++ b/src/blixemApp/blxpanel.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2016-04-07
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/blxpanel.hpp b/src/blixemApp/blxpanel.hpp
index 5d602115cb02d4098093c28d1fe87cb5e61d549a..3b1bf65f946f08dbc195d5ed863fffab66927a91 100644
--- a/src/blixemApp/blxpanel.hpp
+++ b/src/blixemApp/blxpanel.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2016-04-07
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/blxview.cpp b/src/blixemApp/blxview.cpp
index dd7fc0542cedd0a306a172eab4c0d6ed11894272..df48707340a11bc0e964efede01eac5a79adc460 100644
--- a/src/blixemApp/blxview.cpp
+++ b/src/blixemApp/blxview.cpp
@@ -2,20 +2,17 @@
* Author: Erik Sonnhammer, 1993-02-20
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/blxview.hpp b/src/blixemApp/blxview.hpp
index e8b791e3a85fed46de37dc75cf3ed836508eb799..0b93e8a2cb8b6502e56a6373c47ebb6f9fe129aa 100644
--- a/src/blixemApp/blxview.hpp
+++ b/src/blixemApp/blxview.hpp
@@ -2,20 +2,17 @@
* Author: Erik Sonnhammer, 1992-02-20
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/blxwindow.cpp b/src/blixemApp/blxwindow.cpp
index 145ec7950b2db7137f811511786f0404bda4fc0c..006a01f84c0ba71ed15e4e848473d6d1cce25b4e 100644
--- a/src/blixemApp/blxwindow.cpp
+++ b/src/blixemApp/blxwindow.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2009-11-24
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/blxwindow.hpp b/src/blixemApp/blxwindow.hpp
index f28d21ce915155befe516d3b0382ac4000220363..aa500785b6f81b6c7df4a547fc7830adf0b89152 100644
--- a/src/blixemApp/blxwindow.hpp
+++ b/src/blixemApp/blxwindow.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2009-11-24
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/coverageview.cpp b/src/blixemApp/coverageview.cpp
index 7b65b62efbf443c8d1dc0ef5dcd1a8b52eb92ddb..952a33836d6b01d4f9a5844ab409c2c9a2c31022 100644
--- a/src/blixemApp/coverageview.cpp
+++ b/src/blixemApp/coverageview.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2011-03-21
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/coverageview.hpp b/src/blixemApp/coverageview.hpp
index 6a97af979046947134fd9e979c2bf5e853318f2c..3ae82ec314e03392b52173b83939ff79d13edfb8 100644
--- a/src/blixemApp/coverageview.hpp
+++ b/src/blixemApp/coverageview.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2011-03-21
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/detailview.cpp b/src/blixemApp/detailview.cpp
index e4bf6ccf54caa13aaa79896f19610d7f0f890f80..b4befa2d6d7181104272fb0620e2f747afb73e5d 100644
--- a/src/blixemApp/detailview.cpp
+++ b/src/blixemApp/detailview.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2009-11-23
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/detailview.hpp b/src/blixemApp/detailview.hpp
index d3fe3ef2ad7fa2fcb0f7a4c31160125ffb357eec..555c1d0db89f9ec8a442d1edf2f20636b0c180ce 100644
--- a/src/blixemApp/detailview.hpp
+++ b/src/blixemApp/detailview.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2009-11-23
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/detailviewtree.cpp b/src/blixemApp/detailviewtree.cpp
index 68f8d394ee6e628696158abe2c0a1f1943a03f0f..99a3e56a2c190136cb77821c5b459668f9b788ae 100644
--- a/src/blixemApp/detailviewtree.cpp
+++ b/src/blixemApp/detailviewtree.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2009-11-23
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/detailviewtree.hpp b/src/blixemApp/detailviewtree.hpp
index b6c788cffebdf47fc69acdfec5597c7c01c231e7..6d47338fffe46fdebbc9705a910826ed33755cd2 100644
--- a/src/blixemApp/detailviewtree.hpp
+++ b/src/blixemApp/detailviewtree.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2009-11-23
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/exonview.cpp b/src/blixemApp/exonview.cpp
index d9b706aa238f1fe248ceb1b949263eec7157e22f..dcdcb75fa34b49331e9bc491382dd4f7b52853c1 100644
--- a/src/blixemApp/exonview.cpp
+++ b/src/blixemApp/exonview.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2009-12-24
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/exonview.hpp b/src/blixemApp/exonview.hpp
index 4fb602071d6b9703ddd502e6dac283aab14e2d48..ddab944991e05e12baeadb2250e5b09714e63753 100644
--- a/src/blixemApp/exonview.hpp
+++ b/src/blixemApp/exonview.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2009-12-24
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/sequencecellrenderer.cpp b/src/blixemApp/sequencecellrenderer.cpp
index 3268460d6fa85c7c8a831363e6566f0b027f20ad..6e1a10c45c323a70d3a764875cc22d9689d9afb7 100644
--- a/src/blixemApp/sequencecellrenderer.cpp
+++ b/src/blixemApp/sequencecellrenderer.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2009-10-15
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/blixemApp/sequencecellrenderer.hpp b/src/blixemApp/sequencecellrenderer.hpp
index 2ef69576576174ed615608c8552554eba422c517..b46494acb458026a93f07a4e5a2e7e18a3df05f4 100644
--- a/src/blixemApp/sequencecellrenderer.hpp
+++ b/src/blixemApp/sequencecellrenderer.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2009-10-15
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/dotterApp/alignmenttool.cpp b/src/dotterApp/alignmenttool.cpp
index 5122ccbe029d653f4e8e5e63207a16f19d9b56eb..a08e5b98f81fc306a352767f4c6018a82f4aac31 100644
--- a/src/dotterApp/alignmenttool.cpp
+++ b/src/dotterApp/alignmenttool.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2010-09-02
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/dotterApp/dotplot.cpp b/src/dotterApp/dotplot.cpp
index 2007452fb22e402afd8c05b1653bc527768c7158..d0f46f3e8ac31e77e4920f61b29db2ed7a97758e 100644
--- a/src/dotterApp/dotplot.cpp
+++ b/src/dotterApp/dotplot.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2010-09-08
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/dotterApp/dotter.cpp b/src/dotterApp/dotter.cpp
index 7424d5841c40fe065e83d4f0e4286c577cba483e..c34927b2c2e9b2df60434d3a2d9aa63be5815c5c 100644
--- a/src/dotterApp/dotter.cpp
+++ b/src/dotterApp/dotter.cpp
@@ -2,20 +2,17 @@
* Author: Erik Sonnhammer, 1993-09-04
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/dotterApp/dotter.hpp b/src/dotterApp/dotter.hpp
index 7187bb3290a3c7778fb4ab7963ee9268e04fb46e..89f457867cb874d7f3e57806604643975e5813ce 100644
--- a/src/dotterApp/dotter.hpp
+++ b/src/dotterApp/dotter.hpp
@@ -2,20 +2,17 @@
* Author: Erik Sonnhammer, 1999-08-26
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/dotterApp/dotterKarlin.cpp b/src/dotterApp/dotterKarlin.cpp
index 61caabcc5969d6d5a12b4439d4ce88451bffc132..00606c26b36951dce30999d1c072d96bd433b47d 100644
--- a/src/dotterApp/dotterKarlin.cpp
+++ b/src/dotterApp/dotterKarlin.cpp
@@ -2,20 +2,17 @@
* Author: Erik Sonnhammer, 1995-08-28
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/dotterApp/dotterMain.cpp b/src/dotterApp/dotterMain.cpp
index 2105d1e5e538fe1c5f010cabe4454160eabed6cf..840eaf24b807eb0bc32a0f9f099f34f163c6350d 100644
--- a/src/dotterApp/dotterMain.cpp
+++ b/src/dotterApp/dotterMain.cpp
@@ -2,20 +2,17 @@
* Author: esr, 1999-08-26
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/dotterApp/dotter_.hpp b/src/dotterApp/dotter_.hpp
index 2646ed8a8b735e87f40d3f8b1d5cfd1c712a83be..e18f3a79a52ec637b85d2cc7251673a7cbe6f0af 100644
--- a/src/dotterApp/dotter_.hpp
+++ b/src/dotterApp/dotter_.hpp
@@ -2,20 +2,17 @@
* Author: esr, 1999-08-26
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/dotterApp/greyramptool.cpp b/src/dotterApp/greyramptool.cpp
index 7f1be39222e430c5edc4105c750a7398e18d84ba..84a5bf36b6c678e7ef7c4106cacbb70ea734a579 100644
--- a/src/dotterApp/greyramptool.cpp
+++ b/src/dotterApp/greyramptool.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2010-08-31
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/dotterApp/seqtoolsExonView.cpp b/src/dotterApp/seqtoolsExonView.cpp
index 6805cc2a4df95ff98659db6056bbac9d4d05ce97..b11541c51a4c08d03daa23ee5f266e3c5b1fd94f 100644
--- a/src/dotterApp/seqtoolsExonView.cpp
+++ b/src/dotterApp/seqtoolsExonView.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2009-12-24
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/dotterApp/seqtoolsExonView.hpp b/src/dotterApp/seqtoolsExonView.hpp
index 34dd0cdb62fe6ffc7b139a6bc044221f77347903..0d5b16acba3339f47eca1e7e1a4855a636f645e5 100644
--- a/src/dotterApp/seqtoolsExonView.hpp
+++ b/src/dotterApp/seqtoolsExonView.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2009-12-24
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/seqtoolsUtils/blxGff3Parser.cpp b/src/seqtoolsUtils/blxGff3Parser.cpp
index f85d26a9b172992c4c62333361efee23f7b82dfb..b7348652f74248d444c573d2fd39b0984c2b7cf8 100644
--- a/src/seqtoolsUtils/blxGff3Parser.cpp
+++ b/src/seqtoolsUtils/blxGff3Parser.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/seqtoolsUtils/blxGff3Parser.hpp b/src/seqtoolsUtils/blxGff3Parser.hpp
index 53a34a3193e2ff1a61577863e45ba1c155118202..cf9bfcca5177afd06246e5b7d52369bdc5d0595f 100644
--- a/src/seqtoolsUtils/blxGff3Parser.hpp
+++ b/src/seqtoolsUtils/blxGff3Parser.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/seqtoolsUtils/blxmsp.cpp b/src/seqtoolsUtils/blxmsp.cpp
index fcb2456b092201ffe077a3eefaa72b7fb73c3921..f7026a3f2f8c3bcd6189a00e7fea3889abc1d5be 100644
--- a/src/seqtoolsUtils/blxmsp.cpp
+++ b/src/seqtoolsUtils/blxmsp.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2010-09-02
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/seqtoolsUtils/blxmsp.hpp b/src/seqtoolsUtils/blxmsp.hpp
index 7492a7be39cdf4344c5e7859428f84f13a289c27..f5436e4114bb9d422493dcbe62564a5ad610be36 100644
--- a/src/seqtoolsUtils/blxmsp.hpp
+++ b/src/seqtoolsUtils/blxmsp.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2010-09-02
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/seqtoolsUtils/blxparser.cpp b/src/seqtoolsUtils/blxparser.cpp
index 70a760b55ace7deaf04f3a257b7adb933e4a6a54..78ae72cb615f21c327f040fe1b80e4d379be8240 100644
--- a/src/seqtoolsUtils/blxparser.cpp
+++ b/src/seqtoolsUtils/blxparser.cpp
@@ -2,20 +2,17 @@
* Author: Erik Sonnhammer, 1993-05-17
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/seqtoolsUtils/blxparser.hpp b/src/seqtoolsUtils/blxparser.hpp
index c25d91884384ec229ac0205b448848b6cc1e18fa..7daabfbbf184e7f90759ce7a703ab3b016fb11d6 100644
--- a/src/seqtoolsUtils/blxparser.hpp
+++ b/src/seqtoolsUtils/blxparser.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2010-09-02
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/seqtoolsUtils/iupac.hpp b/src/seqtoolsUtils/iupac.hpp
index cc62cfe3c383ad6897bde883033cc045663ff6d2..fe2528918f49db4d2db4ad5b3dc6730384d96118 100644
--- a/src/seqtoolsUtils/iupac.hpp
+++ b/src/seqtoolsUtils/iupac.hpp
@@ -2,20 +2,17 @@
* Author: Fred Wobus, 1999-08-26
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/seqtoolsUtils/seqtoolsFetch.cpp b/src/seqtoolsUtils/seqtoolsFetch.cpp
index 4e6ec9766ca21f4be4f10f47405ec23e57c5d4f3..a57bf57f1734fe0d4afdee2038891ca7a1f8740f 100644
--- a/src/seqtoolsUtils/seqtoolsFetch.cpp
+++ b/src/seqtoolsUtils/seqtoolsFetch.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Guest, 2015-12-21
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/seqtoolsUtils/seqtoolsFetch.hpp b/src/seqtoolsUtils/seqtoolsFetch.hpp
index 4fd2ae6b75bb4e59eac47a549024ce53536c7136..e45ab402753e0a1bbdd7bbe72822861155523010 100644
--- a/src/seqtoolsUtils/seqtoolsFetch.hpp
+++ b/src/seqtoolsUtils/seqtoolsFetch.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Guest, 2015-12-21
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/seqtoolsUtils/seqtoolsWebBrowser.cpp b/src/seqtoolsUtils/seqtoolsWebBrowser.cpp
index 999e0a6465d81bd5528de6a5c6fc62fcc1364228..314f4ead4960f18b7bde27b01b458e8f18acfeea 100644
--- a/src/seqtoolsUtils/seqtoolsWebBrowser.cpp
+++ b/src/seqtoolsUtils/seqtoolsWebBrowser.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/seqtoolsUtils/translate.cpp b/src/seqtoolsUtils/translate.cpp
index 008202783ce8b0f1ba7da235ea441377286fc05e..632ce4eba54b53f93d569185696ef0f8b196208b 100644
--- a/src/seqtoolsUtils/translate.cpp
+++ b/src/seqtoolsUtils/translate.cpp
@@ -2,20 +2,17 @@
* Author: sre, 1993-01-12
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/seqtoolsUtils/utilities.cpp b/src/seqtoolsUtils/utilities.cpp
index 3ee2203239670e471cde7d09f52bfee3559b6c18..f1c5e605f3c47218ace1f9abce159b509f9916c1 100644
--- a/src/seqtoolsUtils/utilities.cpp
+++ b/src/seqtoolsUtils/utilities.cpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2010-01-05
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/seqtoolsUtils/utilities.hpp b/src/seqtoolsUtils/utilities.hpp
index df88c28a953d9428af5d0cf806a5867eb93a34fc..be7f93bc0a18be5d702bd115c3771ab31c0bc527 100644
--- a/src/seqtoolsUtils/utilities.hpp
+++ b/src/seqtoolsUtils/utilities.hpp
@@ -2,20 +2,17 @@
* Author: Gemma Barson, 2010-01-05
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by
diff --git a/src/seqtoolsUtils/version.hpp b/src/seqtoolsUtils/version.hpp
index e009e47e41d2de31d2beb71d13d49e404a343a39..4ca4273889d75adff72f1caec3d133fac0d0507c 100644
--- a/src/seqtoolsUtils/version.hpp
+++ b/src/seqtoolsUtils/version.hpp
@@ -2,20 +2,17 @@
* Author: Ed Griffiths
* Copyright (c) 2006-2017 Genome Research Ltd
* ---------------------------------------------------------------------------
- * SeqTools is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 3
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
* ---------------------------------------------------------------------------
* This file is part of the SeqTools sequence analysis package,
* written by