NB: this documentation may be quite old and need updating
# ----------------------------------------------------------------------------- # ZMap config file format for views. # # # ----------------------------------------------------------------------------- # "ZMap" stanza: # Specifies general properties. # [ZMap] # replaced by views keyword and 'mapping' in the view stanza # default_sequence = b0250 default_printer = n318bw # names of view stanzas. views = b0250 # new keyword, display listed views, single means all in one window, # multiple means all in their own windows, default is multiple. view_windows = < single | multiple > # ----------------------------------------------------------------------------- # "View" stanza: # Specifies properties for fetching a feature context to display to the # the user. # # Currently we support one of these but in the future there can be multiple # views, all of which get displayed. Each view stanza must have a unique name # and it must in turn name the source stanzas which will specify servers # to fetch the view data. # [b0250] # List of featuresets to be displayed, the order is the column order on the screen, # reverse strand is displayed in reverse order. featuresets_display_order = GeneFinderFeatures ; eds_column ; 3 Frame ; 3 Frame Translation ; and many more... # features to be displayed in the navigator window. navigator_sets = Locus ; scale ; genomic_canonical # The _default_ mapping for the view (in the end this should specify blocks etc....) mapping = # list specifying all sources for this view. sources = b0250_acedb_server # ----------------------------------------------------------------------------- # source stanzas specify the servers that fetch the data for sequence # display. Each stanza must have a unique name. # [b0250_acedb_server] url = acedb://any:any@cbi4c:20000 # list of feature sets for this source # (optional, default list is featuresets_display_order from parent view stanza) featuresets = GeneFinderFeatures ; eds_column ; pseudogene ; curated # fetch styles ? (optional, default is true) styles = false # mapping for this source only (optional, default taken from parent view stanza) mapping = # fetch sequence for mapping from this source (optional, default is true) sequence = false