From 060923e6cf5318ad3c1dbea75c100597a15ab04f Mon Sep 17 00:00:00 2001 From: zmap <zmap> Date: Thu, 14 Jan 2010 14:51:33 +0000 Subject: [PATCH] new zmap release notes for 14 January 2010 --- .../release_notes.2010_01_14.shtml | 215 ++++++++++++++++++ 1 file changed, 215 insertions(+) create mode 100644 doc/Release_notes/release_notes.2010_01_14.shtml diff --git a/doc/Release_notes/release_notes.2010_01_14.shtml b/doc/Release_notes/release_notes.2010_01_14.shtml new file mode 100644 index 000000000..36ea64341 --- /dev/null +++ b/doc/Release_notes/release_notes.2010_01_14.shtml @@ -0,0 +1,215 @@ +<!-- File automatically generated. Do not edit. --!> + +<!--#set var="banner" value="ZMap Release Notes For '14 January 2010'" --> +<!--#include virtual="/perl/header" --> +<!--#set var="author" value="edgrif@sanger.ac.uk" --> + +<!-- The release version, etc... --!> + +<h5>Release Version: ZMap 0.1.78 </h5> + + +<h5>Release Date: 14 January 2010</h5> + + +<p> +(Last release was on 22/12/2009) +</p> + +<h5>Request Tracker Tickets Resolved</h5> +<br /> +<!-- Now the resolved tickets... --!> + +<!-- Finished getting the resolved request tracker tickets --!> + +<fieldset><legend>zmap</legend> + +<ul> +<li>Ticket No.<a href="https://rt.sanger.ac.uk/rt/Ticket/Display.html?id=152171">152171</a>, Resolved (Wed Jan 06 10:02:42 2010) +<p>Zmap not running error</p> +<p>cas@sanger.ac.uk</p> +</li> +<li>Ticket No.<a href="https://rt.sanger.ac.uk/rt/Ticket/Display.html?id=153909">153909</a>, Resolved (Wed Jan 13 16:11:52 2010) +<p>Highlighting single exons within a transcript fails</p> +<p>ca1@sanger.ac.uk</p> +</li> +<li>Ticket No.<a href="https://rt.sanger.ac.uk/rt/Ticket/Display.html?id=154125">154125</a>, Resolved (Mon Jan 11 11:59:28 2010) +<p>Zmap crashing in test_otterlace</p> +<p>al1@sanger.ac.uk, mpk@sanger.ac.uk</p> +</li> +<li>Ticket No.<a href="https://rt.sanger.ac.uk/rt/Ticket/Display.html?id=154169">154169</a>, Resolved (Tue Jan 12 09:30:45 2010) +<p>zmap saves incorrect format in clipboard for transcripts</p> +<p>gr5@sanger.ac.uk</p> +</li> +</ul> + +</fieldset><br /> + +<!-- End of tickets --!> + +<fieldset> +<legend>ZMap Changes/Fixes [from cvs]</legend> + +<ul> + <li><!-- --- Start editing ZMap changes here... --- --!> + <a href="http://cvs.internal.sanger.ac.uk/cgi-bin/viewcvs.cgi/ZMap/?root=zmap">Browse CVS</a> + + </li> + <li> doc/Release_notes/release_notes.2009_12_22.shtml: new zmap + release notes for 22 December 2009 + + + </li> + <li> src/include/ZMap/zmapWebPages.h: update release notes file to + release_notes.2009_12_22.shtml + + + </li> + <li> doc/Release_notes/LAST_RELEASE_DATE.txt: update last release + notes to 22/12/2009 + + + </li> + <li> src/zmapUtils/zmapUtils_P.h: + /var/tmp/zmap.12678/ZMap/scripts/versioner run by zmap + + + </li> + <li> src/: include/ZMap/zmapStyle.h, zmapConfig/zmapConfigLoader.c, + zmapFeature/zmapStyle.c, zmapFeature/zmapStyleUtils.c, + zmapFeature/zmapStyle_I.h, + zmapWindow/items/zmapWindowCollectionFeature.c, + zmapWindow/items/zmapWindowGlyphItem.c, + zmapWindow/items/zmapWindowGlyphItem.h: added slash glyphs and + style config options + + + </li> + <li> src/zmapFeature/zmapFeatureData.c: corrected rather obvious cut + and paste error on line 64 - GRAPH mode set as GLYPH + + + </li> + <li> src/: zmapFeature/zmapStyle.c, + zmapWindow/items/zmapWindowCollectionFeature.c: default for + homology glyphs as previous hard coded values fixef temporarily + + + </li> + <li> src/: include/ZMap/zmapStyle.h, zmapConfig/zmapConfigLoader.c, + zmapDraw/zmapDraw.c, zmapFeature/zmapStyle.c, + zmapFeature/zmapStyle_I.h, + zmapWindow/items/zmapWindowBasicFeature.c, + zmapWindow/items/zmapWindowCollectionFeature.c, + zmapWindow/items/zmapWindowGlyphItem.c: free glyphs now work w/ + styles config w/ outline and fill colours and glyph type; default + fill colour broken mysteriously + + + </li> + <li> src/zmapWindow/items/: zmapWindowBasicFeature.c, + zmapWindowGlyphItem.c: changed glyph set color to use GdkColor + as per code usage + + + </li> + <li> src/zmapThreads/zmapThreadsUtils.c: replace CLK_TCK macro with + CLOCKS_PER_SEC which is new POSIX. + + + </li> + <li> src/zmapWindow/zmapWindow.c: fix pasting of transcript exon + coords into selection buffer. + + + </li> + <li> src/zmapWindow/zmapWindowColBump.c: homol sets must now be hashed + to include the match strand, also partial fix to undoing colinear + markers. + + + </li> + <li> src/zmapView/zmapViewCallBlixem.c: fix bug in exon/intron output + (missing match strand), fix permissions for tmp dir and files. + + + </li> + <li> src/zmapWindow/: zmapWindow.c, zmapWindowFeature.c, + zmapWindowItem.c: fix highlighting for shift-click to just + highlight a single exon. + + + </li> + <li> src/zmapWindow/zmapWindowItemFactory.c: fix compiler warning for + missing cast. + + + </li> + <li> src/zmapWindow/items/: zmapWindowCanvasItem.c, + zmapWindowCanvasItem.h: fix highlighting of sub-parts of an + object. + + + </li> + <li> src/zmapWindow/items/zmapWindowCanvasItem_I.h: tidy up some + comments etc. + + + </li> + <li> src/: include/ZMap/zmapServerProtocol.h, zmapServer/zmapServer.c, + zmapServer/zmapServer.h, zmapServer/zmapServerProtocolHandler.c, + zmapServer/zmapServerPrototype.h, zmapServer/acedb/acedbServer.c, + zmapServer/das/dasServer.c, zmapServer/pipe/pipeServer.c: get the + source data struct returned to view. + + + </li> + <li> src/include/ZMap/zmapXRemote.h: add code for failed command. + + + </li> + <li> src/zmapUtils/zmapXRemoteUtils.c: add failed command code. + + + </li> + <li> src/zmapView/zmapView.c: retrieve source data info, e.g. suorce + style. + + + </li> + <li> src/zmapView/zmapViewRemoteReceive.c: add look up of feature + style from source data info., add better error handling for + feature create. + + + </li> + <li> src/zmapView/zmapView_P.h: add source data hash to view state. + + + </li> + <li> src/zmapWindow/zmapWindowColBump.c: removed memory leak on + colbumprange + + <!-- --- End editing ZMap changes here... --- --!> + </li> +</ul> +</fieldset> +<br /> +<fieldset> +<legend>Aceb Changes/Fixes [from cvs]</legend> +<ul> + <li><!-- --- Start editing ACeDB changes here... --- --!> + <a href="http://cvs.internal.sanger.ac.uk/cgi-bin/viewcvs.cgi/acedb/?root=acedb">Browse CVS</a> + + </li> + <li> w9/blxview.c: RT153706: Fixed bug where could not select an MSP + because it thought it was already selected + + <!-- --- End editing ACeDB changes here... --- --!> + </li> +</ul> +</fieldset> +<br /> + +<!--#include virtual="/perl/footer" --> + -- GitLab