From 49853f8d1a41cf6422e803d0ac058b3d09111a49 Mon Sep 17 00:00:00 2001
From: edgrif <edgrif>
Date: Wed, 2 Sep 2009 13:50:52 +0000
Subject: [PATCH] move repeatmasker to be an alignment not a basic feature.
---
src/zmapFeature/zmapFeatureFormatInput.c | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/src/zmapFeature/zmapFeatureFormatInput.c b/src/zmapFeature/zmapFeatureFormatInput.c
index b3dba4afc..288669cf0 100755
--- a/src/zmapFeature/zmapFeatureFormatInput.c
+++ b/src/zmapFeature/zmapFeatureFormatInput.c
@@ -27,9 +27,9 @@
*
* Exported functions: See ZMap/zmapFeature.h
* HISTORY:
- * Last edited: Apr 22 15:00 2009 (edgrif)
+ * Last edited: Aug 28 10:26 2009 (edgrif)
* Created: Thu Sep 15 12:01:30 2005 (rds)
- * CVS info: $Id: zmapFeatureFormatInput.c,v 1.17 2009-04-22 16:25:36 edgrif Exp $
+ * CVS info: $Id: zmapFeatureFormatInput.c,v 1.18 2009-09-02 13:50:52 edgrif Exp $
*-------------------------------------------------------------------
*/
@@ -176,7 +176,6 @@ gboolean zMapFeatureFormatType(gboolean SO_compliant, gboolean default_to_basic,
type = ZMAPSTYLE_MODE_TRANSCRIPT ;
}
else if (g_ascii_strcasecmp(feature_type, "similarity") == 0
- || g_ascii_strcasecmp(feature_type, "repeat") == 0
|| g_ascii_strcasecmp(feature_type, "transcription") == 0)
{
type = ZMAPSTYLE_MODE_ALIGNMENT ;
@@ -188,6 +187,8 @@ gboolean zMapFeatureFormatType(gboolean SO_compliant, gboolean default_to_basic,
|| g_ascii_strcasecmp(feature_type, "Sequence") == 0
#endif /* ED_G_NEVER_INCLUDE_THIS_CODE */
+ || g_ascii_strcasecmp(feature_type, "repeat") == 0
+
|| g_ascii_strcasecmp(feature_type, "atg") == 0
|| g_ascii_strcasecmp(feature_type, "splice3") == 0
|| g_ascii_strcasecmp(feature_type, "splice5") == 0
--
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