From 67932a20627042904d8d6cc9df837f99cc525ca8 Mon Sep 17 00:00:00 2001
From: rds <rds>
Date: Wed, 5 Nov 2008 14:50:43 +0000
Subject: [PATCH] dump gff and context from zmap

---
 scripts/zmap_test_suite.sh | 11 ++++++++++-
 1 file changed, 10 insertions(+), 1 deletion(-)

diff --git a/scripts/zmap_test_suite.sh b/scripts/zmap_test_suite.sh
index b976477cb..2c348543d 100755
--- a/scripts/zmap_test_suite.sh
+++ b/scripts/zmap_test_suite.sh
@@ -153,6 +153,15 @@ featuresets=coding;trf;transcript;est_human
 </segment>
 </zmap>
 __EOC__
+<zmap action="export_context">
+  <export filename="$(pwd)/$SEQUENCE.gff" format="gff" />
+</zmap>
+__EOC__
+<zmap action="export_context">
+  <export filename="$(pwd)/$SEQUENCE.context" format="context" />
+</zmap>
+__EOC__
+
 EOF
 
 
@@ -167,7 +176,7 @@ $PROGRAM_PATH/xremote_gui \
 
 
 # Now there should be 
-# a) a dumpfile
+# a) dumpfiles [$SEQUENCE.gff & $SEQUENCE.context]
 # b) no xremote_gui process
 # c) no zmap process
 # d) no sgifaceserver process
-- 
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