From 6e60ee4c5f2bdca2df85f8b1a67fe74713adb80b Mon Sep 17 00:00:00 2001
From: edgrif <edgrif>
Date: Fri, 5 Feb 2010 11:44:21 +0000
Subject: [PATCH] clarify parent_span meaning.
---
src/include/ZMap/zmapFeature.h | 16 +++++++++++-----
1 file changed, 11 insertions(+), 5 deletions(-)
diff --git a/src/include/ZMap/zmapFeature.h b/src/include/ZMap/zmapFeature.h
index 76a5ceda7..8a46de481 100755
--- a/src/include/ZMap/zmapFeature.h
+++ b/src/include/ZMap/zmapFeature.h
@@ -25,9 +25,9 @@
* Description: Data structures describing a sequence feature.
*
* HISTORY:
- * Last edited: Dec 17 10:23 2009 (edgrif)
+ * Last edited: Feb 5 11:25 2010 (edgrif)
* Created: Fri Jun 11 08:37:19 2004 (edgrif)
- * CVS info: $Id: zmapFeature.h,v 1.168 2009-12-17 14:46:23 edgrif Exp $
+ * CVS info: $Id: zmapFeature.h,v 1.169 2010-02-05 11:44:21 edgrif Exp $
*-------------------------------------------------------------------
*/
#ifndef ZMAP_FEATURE_H
@@ -269,19 +269,25 @@ typedef struct ZMapFeatureContextStruct_
GQuark parent_name ; /* Name of parent sequence
(== sequence_name if no parent). */
+
int length ; /* total length of sequence. */
+
+
/* I think we should remove this as in fact our code will break IF (start != 1) !!!!!!! */
+
/* Mapping for the target sequence, this shows where this section of sequence fits in to its
* overall assembly, e.g. where a clone is located on a chromosome. */
- ZMapSpanStruct parent_span ; /* Start/end of parent, usually we
+ ZMapSpanStruct parent_span ; /* Start/end of ultimate parent, usually we
will have: x1 = 1, x2 = length in
bases of parent. */
+
ZMapMapBlockStruct sequence_to_parent ; /* Shows how this sequence maps to its
ultimate parent. */
+
GList *feature_set_names ; /* Global list of _names_ of all requested
feature sets for the context,
_only_ these sets are loaded into
@@ -333,8 +339,8 @@ typedef struct ZMapFeatureBlockStruct_
ZMapSequenceStruct sequence ; /* DNA sequence for this block,
n.b. there may not be any dna. */
-
- int features_start, features_end ; /* coord limits for fetching features. */
+ int features_start, features_end ; /* coord limits for fetching
+ features. */
} ZMapFeatureBlockStruct, *ZMapFeatureBlock ;
--
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