From 7e246499685af384bd62b2452703f1f38808e350 Mon Sep 17 00:00:00 2001 From: rds <rds> Date: Thu, 30 Apr 2009 07:17:02 +0000 Subject: [PATCH] keep up to date with bump changes --- src/zmapServer/acedb/models.wrm | 33 ++++++++++++--------------------- 1 file changed, 12 insertions(+), 21 deletions(-) diff --git a/src/zmapServer/acedb/models.wrm b/src/zmapServer/acedb/models.wrm index 4d645d76b..21ddd4868 100755 --- a/src/zmapServer/acedb/models.wrm +++ b/src/zmapServer/acedb/models.wrm @@ -29,7 +29,7 @@ // // HISTORY: // Created: Tue Jun 10 08:15:32 2008 (edgrif) -// CVS info: $Id: models.wrm,v 1.2 2008-06-10 15:09:28 rds Exp $ +// CVS info: $Id: models.wrm,v 1.3 2009-04-30 07:17:02 rds Exp $ //------------------------------------------------------------------- // @@ -130,26 +130,17 @@ // Specifies how columns should be displayed when bumped. ?Zmap_overlap Remark Text - Overlap_mode UNIQUE Complete // Draw on top - default ZMAPOVERLAP_COMPLETE, - Compact_cluster // All features with same name in a single column, several names in one - // column but no 2 features overlap. ZMAPOVERLAP_COMPLEX - Compact_cluster_range // All features with same name in a single column if they overlap the - // focus range, all other features in a single column. ZMAPOVERLAP_COMPLEX_RANGE - Cluster // All features with same name in a single column, several names in one - // column but no interleaving of sets of features. ZMAPOVERLAP_NO_INTERLEAVE - Ends_range // Sort by 5' and 3' best/biggest matches, one match per column, very - // fmap like but better... ZMAPOVERLAP_ENDS_RANGE, - Compact_limit // Constrain matches to be colinear within range or are truncated. ZMAPOVERLAP_COMPLEX_LIMIT - Oscillate // Oscillate between one column and another, useful for displaying tile paths. ZMAPOVERLAP_OSCILLATE - Overlap // Bump if match coords overlap. ZMAPOVERLAP_OVERLAP - Position // Bump if match start at same coord. ZMAPOVERLAP_POSITION - Name // One column per match target ZMAPOVERLAP_NAME - Item_overlap // Bump if item coords overlap in canvas space... ZMAPOVERLAP_ITEM_OVERLAP - Simple // One column per match, good for testing... ZMAPOVERLAP_SIMPLE - - - - + Overlap_mode UNIQUE Unbump // No bumping (default) + Overlap // Bump any features overlapping each other. + Start_position // Bump if features have same start coord. + Alternating // Alternate features between two sub_columns, e.g. to display assemblies. + All // A sub-column for every feature. + Name // A sub-column for features with the same name. + Name_interleave // All features with same name in a single sub-column + // but several names interleaved in each sub-column, the most compact display. + Name_no_interleave // Display as for Interleave but no interleaving of different names. + Name_colinear // As for No Interleave but for alignments only colinear shown. + Name_best_Ends // As for No Interleave but for alignments sorted by 5' and 3' best/biggest matches, one sub_column per match. //----------------------------------------------------------------------------------------- // -- GitLab