From a8865547a0d22f161419b948f014b414e8965999 Mon Sep 17 00:00:00 2001
From: edgrif <edgrif>
Date: Wed, 18 Oct 2006 16:02:51 +0000
Subject: [PATCH] fix up release notes and template for them.
---
.../release_notes.2006_10_18.shtml | 770 ++----------------
.../release_notes_template.shtml | 11 +-
2 files changed, 71 insertions(+), 710 deletions(-)
diff --git a/doc/Release_notes/release_notes.2006_10_18.shtml b/doc/Release_notes/release_notes.2006_10_18.shtml
index d9d12a30f..7fc4a7afc 100755
--- a/doc/Release_notes/release_notes.2006_10_18.shtml
+++ b/doc/Release_notes/release_notes.2006_10_18.shtml
@@ -1,15 +1,18 @@
-<!--#set var="banner" value="Release Notes: 18th October 2006"-->
+<!--#set var="banner" value="ZMap Release Notes For October 2006"-->
<!--#include virtual="/perl/header"-->
<!--#set var="author" value="edgrif@sanger.ac.uk" -->
-<h2>ZMap Release Notes For: October 2006</h2>
+<h3>Release Version: ZMap 0.1.7</h3>
-<h3>Release: ZMap 0.1.7</h3>
+
+<h3>Release Date: 18th October 2006</h3>
<h3>Request Tracker Tickets Resolved</h3>
+
+<h4>ZMap</h4>
<PRE>
8581 sizing of pfetch window resolved zmap Nobody 5
hks@sanger.ac.uk 2 months ago 2 months ago 0
@@ -36,752 +39,103 @@
</PRE>
+<h4>Acedb</h4>
+<PRE>
+7303 when will bugs be fixed? resolved acedb Nobody 0
+ mt3@sanger.ac.uk 3 months ago 2 months ago 0
+9343 otterlace bugs resolved acedb edgrif 1
+ rcg@sanger.ac.uk 2 months ago 2 months ago 2 months ago 0
+11790 rename via tace ? resolved acedb edgrif 0
+ ar2@sanger.ac.uk 3 weeks ago 3 weeks ago 3 weeks ago 0
+11808 rename via tace ? resolved acedb Nobody 0
+ ar2@sanger.ac.uk 3 weeks ago 3 weeks ago 0
+5383 MAC - dotter for MacOSX please resolved acedb edgrif 7
+ hjr@sanger.ac.uk 4 months ago 3 months ago 9 days ago 0
+12600 DE line resolved acedb Nobody 0
+ cas@sanger.ac.uk 9 days ago 9 days ago 0
+12481 remove "efetch" resolved acedb Nobody 0
+ jgrg@sanger.ac.uk 12 days ago 5 days ago 0
+</PRE>
-<h3>ZMap Changes/Fixes</h3>
-
-<pre>
-2006-09-01 14:30 edgrif
-
- * src/zmapWindow/zmapWindow.c: make showing of forward strand
- relative coords (like fmap) a config file option.
-
-2006-09-15 10:08 edgrif
-
- * src/include/ZMap/zmapFeature.h: add frame enum, 'only as 3 frame'
- display tag. Add frame to strand attrs func.
-
-2006-09-15 10:09 edgrif
-
- * src/: include/ZMap/zmapGLibUtils.h, zmapUtils/zmapGLibUtils.c:
- add new glist function to move elements in a list.
-
-2006-09-15 10:10 edgrif
-
- * src/lib/Makefile.am: add new longitems file to build for
- zmapwindow code.
-
-2006-09-15 10:12 edgrif
-
- * src/zmapControl/: zmapControlWindowButtons.c, zmapControl_P.h:
- change the protein button to a 3 frame button.
-
-2006-09-15 10:13 edgrif
-
- * src/zmapFeature/zmapFeatureTypes.c: add code to set hide flag for
- style and to read/set 3 frame display for style.
-
-2006-09-15 10:14 edgrif
-
- * src/zmapServer/acedb/acedbServer.c: add code to read no_display
- correctly and set 3 frame and 3 frame only flags.
-
-2006-09-15 10:15 edgrif
-
- * src/include/ZMap/zmapWindow.h: add new call to toggle 3 frame
- display.
-
-2006-09-15 10:16 edgrif
-
- * src/zmapWindow/zmapWindow.c: add new longitem and hash entry
- calls.
-
-2006-09-15 10:16 edgrif
-
- * src/zmapWindow/zmapWindowContainer.h: add longitems parameter to
- container creation and call to get strand group.
-
-2006-09-15 10:18 edgrif
-
- * src/zmapWindow/zmapWindowContainer.c: add longitems object to
- containers so they can remove their items on destruction. Add
- function to get strand group.
-
-2006-09-15 10:19 edgrif
-
- * src/zmapWindow/zmapWindowDraw.c: add start of code to do 3 frame
- display, work in progress
-
-2006-09-15 10:20 edgrif
-
- * src/zmapWindow/zmapWindowDrawFeatures.c: party altered code to
- allow us to call some functions in here from the 3 frame code.
-
-2006-09-15 10:22 edgrif
-
- * src/zmapWindow/zmapWindowFeature.c: add new longitem calls for
- caching items that may need to be clipped. Make the item
- destructor remove the item from longitem.
-
-2006-09-15 10:22 edgrif
-
- * src/zmapWindow/zmapWindowItem.c: minor change to support new hash
- call interface.
-
-2006-09-15 10:23 edgrif
-
- * src/zmapWindow/zmapWindowItemHash.c: introduce frame param for
- making hashes, needed for 3 frame col support, work in progress
-
-2006-09-15 10:24 edgrif
-
- * src/zmapWindow/zmapWindow_P.h: add new encapsulated long item
- stuff, add frame stuff for hashes, add calls to create
- sets/delete sets/columns.
-
-2006-09-15 10:25 edgrif
-
- * src/zmapWindow/zmapWindowSearch.c: add frame stuff for hash
- search, work in progress.
-
-2006-09-15 10:26 edgrif
-
- * src/zmapWindow/zmapWindowUtils.c: remove long item stuff, now in
- its own file.
-
-2006-09-15 10:27 edgrif
-
- * src/zmapWindow/zmapWindowLongItems.c: add new longitems package,
- more encapsulated and works better.
-
-2006-09-26 09:37 edgrif
-
- * src/include/ZMap/zmapConfigStyleDefaults.h: clear up some muddles
- in some of the hard coded column names.
-
-2006-09-26 09:44 edgrif
-
- * src/zmapFeature/zmapFeatureFormatInput.c: add functions to deal
- with a frame type ZMapFrame
-
-2006-09-26 09:45 edgrif
-
- * src/zmapFeature/zmapFeatureUtils.c: add function to retrieve a
- feature set from a block.
-
-2006-09-26 09:47 edgrif
-
- * src/zmapFeature/zmapFeature.c: fix small glitch in hard coded 3
- frame name.
-
-2006-09-26 09:47 edgrif
-
- * src/include/ZMap/zmapFeature.h: add new frame funcs + find
- feature in block.
-
-2006-09-26 09:48 edgrif
-
- * src/include/ZMap/zmapWindow.h: add frame to hash query function.
-
-2006-09-26 09:50 edgrif
-
- * src/zmapWindow/: zmapWindow.c, zmapWindowColConfig.c: feature set
- data is now held in one struct on the canvas obj.
-
-2006-09-26 09:51 edgrif
-
- * src/zmapWindow/zmapWindowSearch.c: add feature frame to search
- criteria for features.
-
-2006-09-26 09:52 edgrif
-
- * src/zmapWindow/: zmapWindowList.c, zmapWindowFeatureList.c: start
- adding feature set frame to query code. NOT FINISHED.
-
-2006-09-26 09:58 edgrif
-
- * src/zmapWindow/zmapWindowItem.c: Add function to get strand/frame
- for a feature set canvas group, code to do better col.
- highlights, add frame to all hash calls.
-
-2006-09-26 10:03 edgrif
-
- * src/zmapWindow/zmapWindowFeature.c: make sure destroy handler run
- for dna/protein items. Add feature frame routine. All set date
- now in one struct on canvas group. Tidy up destroy function and
- make it work !
-
-2006-09-26 10:05 edgrif
-
- * src/zmapWindow/: zmapWindowContainer.c, zmapWindowContainer.h:
- cache background colour and allow it to be reset. Add debug
- function to print feature sets.
-
-2006-09-26 10:28 edgrif
-
- * src/zmapWindow/zmapWindowDraw.c: Add code to toggle between
- normal and 3frame display. code needs factorising + tidying.
-
-2006-09-26 10:40 edgrif
-
- * src/zmapWindow/zmapWindowDrawFeatures.c: Make some of the feature
- set/feature code into externally callable routines so they can be
- used for 3 frame display.
-
-2006-09-26 10:43 edgrif
-
- * src/zmapWindow/zmapWindowItemHash.c: add frame to filters for
- hash search and rationalise use of strand.
-
-2006-09-26 10:47 edgrif
-
- * src/zmapWindow/zmapWindow_P.h: rationalise feature set data held
- on canvas group. Add frame to list col data. Add colours for
- frames. Add frame to lots of funcs.
-
-2006-09-29 10:48 edgrif
-
- * src/include/ZMap/zmapConfigStyleDefaults.h: add hard coded locus
- feature set name, needed because code must search for this in
- requested feature sets.
-
-2006-09-29 10:50 edgrif
-
- * src/include/ZMap/zmapFeature.h: add a processing mode to the
- style, e.g. text mode.
-
-2006-09-29 10:51 edgrif
-
- * src/zmapFeature/: zmapFeatureFormatInput.c, zmapFeature_P.h,
- zmapFeatureTypes.c: add a function to map strings to enums in a
- more generalised way, other funcs need to use this.
-
-2006-09-29 10:52 edgrif
-
- * src/zmapServer/: acedb/acedbServer.c, das/dasServer.c: read a
- style mode for the method to style convertor.
-
-2006-09-29 10:53 edgrif
-
- * src/: zmapServer/file/fileServer.c, zmapConfig/zmapConfigRead.c,
- zmapControl/zmapControlViews.c, zmapWindow/zmapWindowItem.c:
- trivial removal of compiler warning.
-
-2006-09-29 10:56 edgrif
-
- * src/zmapGFF/: zmapGFF2parser.c, zmapGFF_P.h: Funcs to dynamically
- create a locus feature set from features parsed in.
-
-2006-09-29 16:24 edgrif
-
- * src/zmapWindow/: zmapWindow.c, zmapWindowDrawFeatures.c,
- zmapWindow_P.h: add config option to only show frame specific
- stuff on forward strand.
-
-2006-10-02 10:17 edgrif
-
- * src/include/ZMap/zmapFeature.h: add standard prefix for stringify
- of frame.
-
-2006-10-02 10:18 edgrif
-
- * src/: zmapControl/zmapControlWindowInfoPanel.c,
- zmapControl/zmapControl_P.h, zmapWindow/zmapWindow.c: add frame
- information for frame sensitive features when 3 frame is on.
-
-2006-10-02 10:22 edgrif
-
- * src/zmapWindow/: zmapWindowDrawFeatures.c, zmapWindowDraw.c: make
- it optional whether 3 frame cols are shown on reverse strand.
-
-2006-10-02 10:24 edgrif
-
- * src/zmapWindow/zmapWindow_P.h: tidy/correction of 3 frame
- comments.
-
-2006-10-02 10:25 edgrif
-
- * src/zmapWindow/zmapWindowItemHash.c: remove frame prefix, now in
- feature code where it belongs.
-
-2006-10-02 10:37 edgrif
-
- * src/zmapWindow/: zmapWindowDraw.c, zmapWindowItemHash.c: remove
- debugging output...oops.
-
-2006-10-02 16:12 edgrif
-
- * src/: include/ZMap/zmapGLibUtils.h, zmapUtils/zmapGLibUtils.c:
- add trivial function to find a quark in a glist...
-
-2006-10-02 16:13 edgrif
-
- * src/zmapServer/zmapServerProtocolHandler.c: remove redundant
- code.
-
-2006-10-02 16:19 edgrif
-
- * src/zmapServer/acedb/acedbServer.c: check requested feature set
- list _before_ just adding them to the feature sets.
-
-2006-10-02 16:22 edgrif
-
- * src/zmapView/zmapView.c: make sure dna was requested before we
- send off a request to get it.
-
-2006-10-02 16:32 edgrif
-
- * src/zmapServer/acedb/acedbServer.c: fix stupid typo...
-
-2006-10-03 16:05 edgrif
-
- * src/include/ZMap/zmapConfigStyleDefaults.h: add gene finder
- features to predefined style names.
-
-2006-10-03 16:07 edgrif
-
- * src/zmapServer/acedb/acedbServer.c: make gene finder features
- trigger off predefined feature set name.
-
-2006-10-03 16:07 edgrif
-
- * src/zmapUtils/zmapGLibUtils.c: make quark search case insensitive
-
-2006-10-03 16:08 edgrif
-
- * src/zmapWindow/zmapWindowDrawFeatures.c: fix small bug in making
- cols, needs making like 3 frame stuff.
-
-2006-10-03 16:09 edgrif
-
- * src/zmapWindow/zmapWindowFeature.c: fix frame and width by score
- for gene finder stuff.
-
-2006-10-03 16:55 edgrif
-
- * src/zmapWindow/zmapWindowDrawFeatures.c: remove debugging output.
-
-2006-10-04 15:28 rds
-
- * src/zmapWindow/: zmapWindow.c, zmapWindowColConfig.c,
- zmapWindowContainer.c, zmapWindowContainer.h, zmapWindowDraw.c,
- zmapWindowDump.c: Keeping up with changes to
- zmapWindowContainerExecute and zmapWindowContainerExecuteFull
-
- This code keeps better track of the size of the containers rather
- than asking the foo_canvas via foo_canvas_item_get_bounds.
-
-2006-10-06 11:15 edgrif
-
- * src/include/ZMap/zmapConfigStyleDefaults.h: add default
- description strings for predefined styles.
-
-2006-10-06 11:16 edgrif
-
- * src/zmapFeature/zmapFeature.c: add missing header include.
-
-2006-10-06 11:18 edgrif
-
- * src/: include/ZMap/zmapFeature.h, zmapFeature/zmapFeatureTypes.c:
- add functions to: merge two styles, merge two lists of styles,
- return list of predefined styles, destroy a list of styles.
-
-2006-10-06 11:19 edgrif
-
- * src/zmapServer/zmapServerProtocolHandler.c: add code to merge
- styles returned from server with predefined styles.
-
-2006-10-10 09:54 edgrif
-
- * src/zmapDraw/zmapDraw.c: Uncomment my glph code.
-
-2006-10-11 10:44 edgrif
-
- * src/include/Makefile.am: add dna header to build list.
-
-2006-10-11 10:45 edgrif
-
- * src/lib/Makefile.am: add dna utils and dna search/display files.
-
-2006-10-11 10:46 edgrif
-
- * src/zmapUtils/zmapConfigDir.c: fix stupid compiler warning error.
-
-2006-10-11 10:46 edgrif
-
- * src/zmapWindow/zmapWindow.c: make sure new dna windows are thrown
- away properly.
-
-2006-10-11 10:47 edgrif
-
- * src/zmapWindow/zmapWindowDrawFeatures.c: add dna search to col.
- menu.
-
-2006-10-11 10:48 edgrif
-
- * src/zmapWindow/: zmapWindowEditor.c, zmapWindowList.c: add new
- list type param. to calls to feature list code.
-
-2006-10-11 10:49 edgrif
-
- * src/zmapWindow/zmapWindowFeature.c: add dna search to item menu.
-
-2006-10-11 10:49 edgrif
-
- * src/zmapWindow/zmapWindow_P.h: add stuff for new dna match list,
- and new item centre function.
-
-2006-10-11 10:50 edgrif
-
- * src/zmapWindow/zmapWindowItem.c: add new
- zmapWindowItemCentreOnItemSubPart() function to go to location
- within a canvas item.
-
-2006-10-11 10:52 edgrif
-
- * src/zmapWindow/zmapWindowFeatureList.c: add dna_list type, so
- code now does tree, list and dna_list
-
-2006-10-11 11:43 edgrif
-
- * src/zmapWindow/zmapWindowFeature.c: correct frame colours, try to
- get bars the correct length.
-
-2006-10-11 12:35 edgrif
-
- * src/zmapUtils/zmapDNA.c: utility functions for searching/handling
- dna.
-
-2006-10-11 12:36 edgrif
-
- * src/include/ZMap/zmapDNA.h: add header for dna util. funcs.
-
-2006-10-11 12:37 edgrif
-
- * src/zmapWindow/: zmapWindowDNA.c, zmapWindowDNAList.c: add
- functions to search dna for matches.
-
-2006-10-11 16:19 edgrif
-
- * src/zmapFeature/zmapFeatureTypes.c: fix horrible bug that
- prevented the locus stuff appearing.
-
-2006-10-16 11:26 edgrif
-
- * src/: include/ZMap/zmapFeature.h, zmapFeature/zmapFeatureUtils.c:
- Add function to sort align gaps array, need them to be in
- ascending/colinear order.
-2006-10-16 11:27 edgrif
- * src/zmapFeature/zmapFeatureContext.c: fix bug in revcomp, forgot
- to reorder align gaps arrays.
-2006-10-16 11:27 edgrif
+<h3>ZMap Changes/Fixes</h3>
- * src/zmapFeature/zmapFeatureTypes.c: remove debugging output.
+<p>Fix coordinate display for reverse complement to be just like fmap.
-2006-10-16 11:49 edgrif
+<p>Add a "3 Frame" display button to the main window buttons with a sub menu
+which shows the 3 frame translation. User can now toggle 3 frame display off.
- * src/zmapGFF/zmapGFF2parser.c: fix bad bug in parsing gaps
- array...meant we didn't !
+<p>Add frame parameter to search window so users can search by frame as well as strand.
-2006-10-16 11:50 edgrif
+<p>Add some built in styles for "3 Frame", "DNA" and other required columns.
- * src/zmapServer/acedb/acedbServer.c: Make sure we pick up that
- user wants alignments displayed with gaps.
-2006-10-16 11:50 edgrif
+<p>Add code to requrest gene finder features to predefined style names.
- * src/zmapWindow/zmapWindowDNAList.c: clean out redundant code.
+<p>Add dna search window.
-2006-10-16 11:51 edgrif
+<p>Fix bug that meant we did not get the alignment gaps data, needed for display and
+especially blixem.
- * src/zmapWindow/zmapWindowFeature.c: dummy not set correctly so
- crashes code sometimes.
+<p>Fix bug in data passed to blixem, coords wrong for revcomp'd sequence.
-2006-10-16 11:52 edgrif
+<p>Add code to display release notes.
- * src/zmapWindow/zmapWindowCallBlixem.c: add config file resource
- for removal of tmp files. fix bug in writing exblx file for
- revcomp features.
+<p>Set up standalone zmap website at: http://wwwdev.sanger.ac.uk/Software/analysis/ZMap/
-2006-10-18 09:47 edgrif
+<p>Replace left hand scroll bar with navigator window showing clone assembly, locus
+names, overall scale and a box to indicate the scrollable region which can be dragged
+to move the region at high zoom levels.
- * doc/Release_notes/: index.shtml, release_notes.2006_10_18.shtml:
- start release notes directory
+<p>Fix bugs in text items and text highlighting.
-2006-10-18 09:57 edgrif
+<p>Add scale to the list of default styles
- * doc/Release_notes/index.shtml: minor typo in file name.
</pre>
<h3>Acedb Changes/Fixes</h3>
-<pre>
-2006-02-02 11:31 edgrif
-
- * acedb/w7/fmapfeatures.c: fix old bug which led to double intron
- records for DBs like wormbase.
-
-2006-02-13 15:43 edgrif
-
- * acedb/w9/blxview.c: Add graphical progress meter to blixem with a
- cancel button !
-
-2006-03-08 08:01 edgrif
-
- * acedb/: wh/display.h, w6/display.c, w7/mapcontrol.c: add column
- overlap threshold as an option to displays.wrm, lace system needs
- this because they have many columns.
-
-2006-03-08 09:28 edgrif
-
- * acedb/wnq/aceversion.c: update release tag...out of step sigh....
-
-2006-03-08 10:39 edgrif
-
- * acedb/wnq/aceversion.c: increment for next code version.
-
-2006-03-08 10:57 edgrif
-
- * acedb/w6/display.c: dummy change, something wrong with time
- stamp...
-
-2006-03-13 10:40 edgrif
-
- * acedb/w9/blxview.c: change failure message for sequence pfetching
- to be dumped to log only, annoying for annotators otherwise.
-
-2006-04-11 09:40 edgrif
-
- * acedb/wmake/truemake: Jean spotted that gf binary does not use
- $(CC)
-
-2006-06-15 11:43 edgrif
-
- * acedb/w4/gifcommand.c: improve comments for source/methods flags.
-
-2006-06-15 11:44 edgrif
-
- * acedb/w7/fmapcontrol.c: fix stupid bug in addToSet and make it
- cope with embedded blanks in source/method names.
-
-2006-06-15 11:58 edgrif
-
- * acedb/w7/gff.c: get urls dumped for zmap and clean up column
- group stuff and make sure we dump strand stuff whenever its valid
- for zmap.
-
-2006-06-15 12:09 edgrif
-
- * acedb/w9/blxview.c: fix up progress meter for pfetch from blixem.
-
-2006-06-15 12:10 edgrif
-
- * acedb/wmake/truemake: fix link command for genefeatures
- executable.
-
-2006-06-15 14:01 edgrif
-
- * acedb/wmake/LINUX_GTK2_4_DEF: this file is now LINUX_4_DEF, we
- only need one linux def file.
-
-2006-06-15 14:12 edgrif
-
- * acedb/wmake/ALPHA_5_ZMAP_DEF: not needed anymore, zmap is not
- part of acedb.
-
-2006-06-15 14:24 edgrif
-
- * acedb/wmake/ALPHA_5_GTK2_DEF: no longer needed, all alpha builds
- going to gkt2
-
-2006-06-15 14:34 edgrif
-
- * acedb/wmake/DARWIN_4_GTK2_DEF: not needed any more as darwin
- build is gtk2 only.
-
-2006-06-15 14:35 edgrif
-
- * acedb/wmake/: ALPHA_5_DEF, LINUX_4_DEF: update alpha, darwin and
- linux builds to gtk2
-
-2006-06-15 14:40 edgrif
-
- * acedb/wmake/OPTERON_4_DEF: update for new gtk2 build.
-
-2006-06-15 14:47 edgrif
-
- * acedb/w3rdparty/: cygncurses6.dll, cygwin1.dll, glib-1.3.dll,
- gtk-1.3.dll, cygreadline5.dll, gdk-1.3.dll, gmodule-1.3.dll: we
- are no longer supporting windows builds.
-
-2006-06-15 14:49 edgrif
-
- * acedb/w3rdparty/: gzip.exe, rxvt.exe, sh.exe, sort.exe: we no
- longer support windows builds.
-
-2006-06-15 14:54 edgrif
-
- * acedb/w3rdparty/: glib-2.2.3.tar.gz, libpng-1.2.5.tar.gz,
- glib-1.2.10.tar.gz, libiconv-1.9.1.tar.gz, readline-4.1.tar.gz,
- gettext-0.12.1.tar.gz, gtk+-2.2.4.tar.gz,
- pkgconfig-0.14.0.tar.gz, atk-1.2.4.tar.gz, gtk+-1.2.10.tar.gz,
- pango-1.2.3.tar.gz: we no longer support static builds.
-
-2006-06-15 14:56 edgrif
-
- * acedb/w3rdparty/: build_all_3rdparty, extract_gnu_lib, lndir: we
- don't support static builds any more.
-
-2006-06-15 15:00 edgrif
-
- * acedb/w3rdparty/: acedb-config, include-config, libs-config:
- updated to do just the gtk2 dynamic build.
-
-2006-06-19 15:20 edgrif
-
- * acedb/wnq/aceversion.c: increment update number.
-
-2006-06-20 09:58 edgrif
-
- * acedb/wnq/aceversion.c: oops, got ahead of myself, decrement
- update level.
-
-2006-06-20 14:08 edgrif
-
- * acedb/wnq/aceversion.c: increment the update number.
-
-2006-06-22 09:13 edgrif
-
- * acedb/w7/gff.c: add locus name dumping for zmap/gff.
-
-2006-06-29 10:21 edgrif
-
- * acedb/wmake/DARWIN_4_DEF: udpate darwin to work on gtk2 stuff.
-
-2006-06-29 10:56 edgrif
-
- * acedb/wmake/DARWIN_4_DEF: finally fix darwin build with all libs
- required...
-
-2006-06-30 18:20 edgrif
-
- * acedb/wtools/MAKE_INSTALL: update to replace sgi/sun builds with
- mac builds.
-
-2006-07-03 09:32 edgrif
-
- * acedb/: w2/graphcon.c, w9/blxview.c: fix bad bug in blixem/graph,
- overwriting of messprintf's static buffer is again the culprit.
-
-2006-07-03 09:44 edgrif
-
- * acedb/wh/regular.h: add some warning comments about messprintf(),
- a deadly function.
-
-2006-07-03 09:45 edgrif
-
- * acedb/w2/graphgtk.c: remove erroneous gtk2 code, produces wrong
- dialog window.
-
-2006-07-03 09:50 edgrif
-
- * acedb/w6/treedisp.c: fix up autopreserve to work more
- consistently, displays originating from the keyset window would
- ignore autopreserve.
-
-2006-07-03 10:02 edgrif
-
- * acedb/: w2/gex.c, wh/gex.h: fix up gex code for gtk2, some stuff
- redundant, other bits just wrong.
-
-2006-07-12 16:08 edgrif
-
- * acedb/w9/: blixem_.h, blxmain.c: update blixem version and make
- sure it gets displayed correctly.
-
-2006-07-12 16:26 edgrif
-
- * acedb/w9/blxview.c: fix bug caused by change to gtk2, some of
- blixems graphs were not being updated.
-
-2006-07-12 16:34 edgrif
-
- * acedb/w2/graphgtk.c: fix bug in
- scrollwindow->viewport->drawingarea updates, gtk2 seems to have
- changed the way exposes are generated.
-
-2006-07-17 10:30 edgrif
-
- * acedb/wnq/aceversion.c: increment update level.
-
-2006-08-08 13:01 edgrif
-
- * acedb/w6/treedisp.c: switch autopreserve off by default.
-
-2006-08-08 13:02 edgrif
-
- * acedb/w4/session.c: fix up Mac compiles on intel machines.
-
-2006-08-08 13:05 edgrif
-
- * acedb/w7/: fmap_.h, fmapcontrol.c, fmapgene.c: add option to get
- genefinder features _without_ doing an fmap redraw which messes
- up the coords.
-
-2006-08-08 13:55 edgrif
-
- * acedb/wnq/aceversion.c: increment the update number.
-
-2006-08-09 17:33 edgrif
-
- * acedb/w9/blxview.c: change toolbar to use gtk2 calls so toolbar
- is not so long.
-
-2006-08-30 15:30 edgrif
-
- * acedb/wsocket/serverace.c: stop server from any kind of saving
- when readonly.
-
-2006-08-31 16:05 edgrif
-
- * acedb/wsocket/: acesocket.c, saceclient.c, serverace.c: change
- shutdown behaviour so that if client says shutdown, it must also
- now explicitly quit.
+<p>Fixed bug that led to double intron records in GFF for DBs like wormbase.
-2006-09-01 16:28 edgrif
+<p>Added graphical progress meter to blixem for pfetching, with a cancel button !
- * acedb/wmake/truemake: make sure aceversion is updated when server
- is updated.
+<p>Added column overlap threshold as an option to displays.wrm, lace system
+needs this because they have many columns.
-2006-09-15 11:12 edgrif
+<p>Move acedb to use GTK2 libraries.
- * acedb/: w4/session.c, w9/belvu.c, w9/embl.c, wh/dotter_.h: fix
- compilation bugs on the Mac caused by more stringent version of
- gcc.
+<p>Make acedb dump locus names in GFF so zmap can read them.
-2006-09-27 10:41 edgrif
+<p>Fix bad bug in blixem/graph, overwriting of messprintf's static buffer is again the culprit.
- * acedb/w7/: smapconvert.c, fmapfeatures.c: fix subtle bug where
- value returned in smapconvert caused later crash in fmapfeatures
- display..ugh.
+<p>Remove erroneous gtk2 code, produces wrong dialog window.
-2006-10-09 12:26 edgrif
+<p>Fix up autopreserve to work more consistently: displays originating from the keyset window would
+no longer ignore autopreserve. autopreserve is off by default. User can now set autopreserve to allow no preserve,
+preserve of selected windows or preserve of all windows.
- * acedb/w2/gex.c: set line wrapping by word as default mode for
- text widget.
+<p>Make sure blixem version gets displayed correctly.
-2006-10-11 15:21 edgrif
+<p> Fix bug caused by change to gtk2, some of blixems windows were not being updated.
- * acedb/w2/graphgdkremote.c: make acedb use the open command for
- urls on the mac.
+<p>Add option to get genefinder features _without_ doing an fmap redraw which messes up the coords,
+needed to show gene finder features in zmap.
-2006-10-18 08:54 edgrif
+<p>Fix toolbar in blixem so that it shows sequence name properly.
- * acedb/w7/fmapgene.c: remove debug message.
+<p>Fix acedb server from any kind of saving when readonly.
-2006-10-18 08:55 edgrif
+<p>Fix server shutdown behaviour so that if client says shutdown, it must also now explicitly quit,
+required so that lace can shut server down cleanly.
- * acedb/: w4/prefsubs.c, w7/fmapfeatures.c, wh/pref.h: Add option
- to stop blixem removing its temp files, good for debug.
+<p>Set line wrapping by word as default mode for text widget, helps annotation in lace.
-2006-10-18 09:08 edgrif
+<p>Make acedb use the open command for urls on the mac.
- * acedb/w6/treedisp.c: fix up autopreserve to allow no preserve,
- preserve of selected windows or preserve of all windows.
</pre>
diff --git a/doc/Release_notes/release_notes_template.shtml b/doc/Release_notes/release_notes_template.shtml
index d3eabac2f..9f775425f 100755
--- a/doc/Release_notes/release_notes_template.shtml
+++ b/doc/Release_notes/release_notes_template.shtml
@@ -1,4 +1,4 @@
-<!--#set var="banner" value="Release Notes: 18th October 2006"-->
+<!--#set var="banner" value="Release Notes For **Month Year**"-->
<!--#include virtual="/perl/header"-->
<!--#set var="author" value="edgrif@sanger.ac.uk" -->
@@ -7,15 +7,22 @@
and fill in the blanks, marked with **. -->
-<h2>ZMap Release Notes For: **Month Year**</h2>
+<h3>Release Version: ZMap **X.X.X**</h3>
+
+
+<h3>Release Date: **XXth Month Year**</h3>
<h3>Request Tracker Tickets Resolved</h3>
+<h4>ZMap</h4>
<PRE>
</PRE>
+<h4>Acedb</h4>
+<PRE>
+</PRE>
<h3>ZMap Changes/Fixes</h3>
--
GitLab