From c4d6adefdaee83b6faf7e822db5d3e87911c0d46 Mon Sep 17 00:00:00 2001
From: edgrif <edgrif>
Date: Wed, 2 Dec 2009 16:30:04 +0000
Subject: [PATCH] fix revcomp display of assembly path.
---
src/zmapFeature/zmapFeatureContext.c | 11 ++++++++---
1 file changed, 8 insertions(+), 3 deletions(-)
diff --git a/src/zmapFeature/zmapFeatureContext.c b/src/zmapFeature/zmapFeatureContext.c
index 83814ea81..f09224e79 100755
--- a/src/zmapFeature/zmapFeatureContext.c
+++ b/src/zmapFeature/zmapFeatureContext.c
@@ -27,9 +27,9 @@
*
* Exported functions: See ZMap/zmapFeature.h
* HISTORY:
- * Last edited: Nov 26 11:54 2009 (edgrif)
+ * Last edited: Nov 30 16:23 2009 (edgrif)
* Created: Tue Jan 17 16:13:12 2006 (edgrif)
- * CVS info: $Id: zmapFeatureContext.c,v 1.48 2009-11-27 13:14:47 edgrif Exp $
+ * CVS info: $Id: zmapFeatureContext.c,v 1.49 2009-12-02 16:30:04 edgrif Exp $
*-------------------------------------------------------------------
*/
@@ -943,6 +943,7 @@ static void revCompFeature(ZMapFeature feature, int end_coord)
&& feature->feature.homol.align)
{
int i ;
+
for (i = 0; i < feature->feature.homol.align->len; i++)
{
ZMapAlignBlock align ;
@@ -954,7 +955,11 @@ static void revCompFeature(ZMapFeature feature, int end_coord)
zMapFeatureSortGaps(feature->feature.homol.align) ;
}
-
+ else if (feature->type == ZMAPSTYLE_MODE_ASSEMBLY_PATH)
+ {
+ if (feature->feature.assembly_path.path)
+ revcompSpan(feature->feature.assembly_path.path, end_coord) ;
+ }
return ;
}
--
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