From fc89f7c498552b5aac5ab8522b73b01623c8ca6c Mon Sep 17 00:00:00 2001
From: edgrif <edgrif>
Date: Wed, 2 Sep 2009 13:50:18 +0000
Subject: [PATCH] fix up our handling of homols, coords are always forward now.
---
src/zmapFeature/zmapFeature.c | 15 ++++++++-------
1 file changed, 8 insertions(+), 7 deletions(-)
diff --git a/src/zmapFeature/zmapFeature.c b/src/zmapFeature/zmapFeature.c
index c737e6563..10257da28 100755
--- a/src/zmapFeature/zmapFeature.c
+++ b/src/zmapFeature/zmapFeature.c
@@ -28,9 +28,9 @@
*
* Exported functions: See zmapView_P.h
* HISTORY:
- * Last edited: Jul 6 14:51 2009 (rds)
+ * Last edited: Aug 27 17:33 2009 (edgrif)
* Created: Fri Jul 16 13:05:58 2004 (edgrif)
- * CVS info: $Id: zmapFeature.c,v 1.114 2009-07-27 03:16:20 rds Exp $
+ * CVS info: $Id: zmapFeature.c,v 1.115 2009-09-02 13:50:18 edgrif Exp $
*-------------------------------------------------------------------
*/
@@ -775,12 +775,13 @@ gboolean zMapFeatureAddAlignmentData(ZMapFeature feature,
feature->feature.homol.strand = query_strand ;
feature->feature.homol.target_phase = target_phase ;
- if(query_start > query_end)
+ if (query_start > query_end)
{
int tmp;
- tmp = query_start;
- query_start = query_end;
- query_end = tmp;
+
+ tmp = query_start ;
+ query_start = query_end ;
+ query_end = tmp ;
}
feature->feature.homol.y1 = query_start ;
@@ -908,7 +909,7 @@ int zMapFeatureLength(ZMapFeature feature, ZMapFeatureLengthType length_type)
if (feature->type == ZMAPSTYLE_MODE_ALIGNMENT)
{
- length = abs(feature->feature.homol.y2 - feature->feature.homol.y1) + 1 ;
+ length = feature->feature.homol.y2 - feature->feature.homol.y1 + 1 ;
}
else
{
--
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