GitLab

Fixed the issue with empty groups getting displayed in the Pseudogene stats section for Wheat.

Behaviour:
- Change 3-column popup layout to a 2-column layout
- When a video is selected, it occupies all available space of the left column
- The list of related articles and videos does not change once the first article is loaded
Code:
- Moved logic for fetching help articles and keeping track of article updates
   into a dedicated hook (useHelpArticles)
- Fixed a bug in the useApiService hook

Populate the species homepage sidebar by using sample data defined locally.

Update the AppBar species lozenge with the new design.

Clicking on the protein id in the transcript accordion will now open the protein view, automatically expands the selected protein and scroll it into the view.

- Added loaders to both ProteinList & ProteinListItemInfo
- Added the functionality to expand the first transcript by default in both transcript and protein view
-  Added the functionality to retain the scroll position when revisiting the transcript and protein view.
- Created useRestoreScrollPosition hook

Clicking on a popular species button for a committed species will open the species homepage instead of removing the species.

- fix checkbox styling in instant protein download component
- show the blue protein bar in the protein image
- show external references in EntityViewer sidebar

Hide the example links popup and display a link to genome browser when the environment is production.

- Created the ExpandableSection shared component
- Created the species page accordion
- Created the sample-data and the transformation function to populate the species homepage accordion including the example links
Co-authored-by: Andrey Azov <andrey@ebi.ac.uk>

Also, fixed extra width bug in EntityViewer transcripts view
that was caused by moving transcript-wrapping divs via `transform: translate`

* New selected species lozenge component with tests and stories

- New question icon
- Updated styles for QuestionButton
- Use the `useHover` hook in QuestionButton
- Update QuestionButton
- Replace the `dl` and `dd`-based markup for BrowserTrackConfig
  with a div-based one
- Remove default 40px width from SlideToggle 

Notable:
- Typescript v3 -> v4
- Storybook v5 -> v6
  - changed stories from `storiesOf` format to component story format
- Postcss-loader v3 -> v4
- D3 v5 -> v6

* Design review changes - 2

* Updates to left column in transcript list
Co-authored-by: Andrey Azov <andrey@ebi.ac.uk>

Add generic stats component for the species page

- Add the skeleton species page (/species/:genome_id)
- If species has not yet been selected, request its genome info and add it to the list of selected species
- Remove /app from the url
- Remove the Content component. Useless.
- Set up very basic redux state for the sidebar (open/close)
- Fix occasionally failing test of Checkbox

* Test data for first draft of species page accordion - ENSWEBREL-744

* Revert "Test data for first draft of species page accordion - ENSWEBREL-744"

This reverts commit b4f0c8b9.

* Test data for first draft of species page accordion - ENSWEBREL-744

* Entity viewer design review changes
* Scaleswitcher changed to entityTypeIndicator and move it to global shared component

Also:
- add modal component
- add CloseButton component

- also, disable tabs in gene view for panels that have no content

- Remove message counter from messaging to/from genome browser
- Update useBrowserRouting to avoid reporting location from url back to genome browser
  if it's the same location that genome browser sent to React

The view was always getting set as transcripts as the default value was defined in the wrong place.

The following states are now maintained in entity viewer:
- View
- Expanded transcripts
- Expanded transcript downloads
- Expanded proteins