GitLab

Implemented transcripts sorting and added tests, set minimum 6 transcripts to show filter and sort label

* unlink pdb summary stats from xrefs
* always show instant download irrespective of xref id availability

- Multiple xrefs from the same group are now displayed within an accordion
- If the xref source description and accession_id matched, the label will be hidden
- If the xref source description and the xref group name matched, the label will be hidden

Fixed the issue mentioned in the ticket by ensuring that the species is enabled when it is accessed using the direct url

* Add selected transcript to protein view

* move gene image width to shared css

- Added storage service to species page
- Species stats accordion expanded statuses are stored in the session storage for each genome
- Fixed an issue with the storage service update function where the array values such as [x] was not getting updated to [] when we use merge (lodash/lodash#1313)

Fixed the issue where the disabled species was getting accidentally deleted when browser back button is pressed

Only show filter and sort when there is > 3 transcripts, remove npx command as it breaks for windows system, add filter and sort redux state

The example links are now hidden when the species is in Don't use state

* new shared mixin css

* AppShell not required anymore; css layout scroll/height fix

Updated the example link text displayed in the entity viewer interstitial screen.

* open external links in new tab

Displaying an error message when the data fails to load along with a button to retry.

- Updated the type definition of gene symbol to String | null.
- Updated the example link text displayed in the genome browser bookmarks modal.
-  Updated the example link text displayed in the genome browser interstitial page

Updated the styling of the species tab in species selector when the species is not used.

- remove "View in genome browser" link from species selector page
- remove the "I am sidebar navigation" placeholder from species page
- update the favicon to match the new branding

use `/help-api` endpoint to proxy requests for the help & docs api service

- Update app topbar with the new logotype
- Remove the "e!" Ensembl logo
- Remove the video part of the HelpPopupButton
- Updated Home icon used in the topbar (the house image moved within the svg canvas)
- HeaderButtons component removed, because it's no longer used
- Update the icon for button linking to species page in HomepageAppLinks component

Fixed the issue with empty groups getting displayed in the Pseudogene stats section for Wheat.

Behaviour:
- Change 3-column popup layout to a 2-column layout
- When a video is selected, it occupies all available space of the left column
- The list of related articles and videos does not change once the first article is loaded
Code:
- Moved logic for fetching help articles and keeping track of article updates
   into a dedicated hook (useHelpArticles)
- Fixed a bug in the useApiService hook

Populate the species homepage sidebar by using sample data defined locally.

Update the AppBar species lozenge with the new design.

Clicking on the protein id in the transcript accordion will now open the protein view, automatically expands the selected protein and scroll it into the view.

- Added loaders to both ProteinList & ProteinListItemInfo
- Added the functionality to expand the first transcript by default in both transcript and protein view
-  Added the functionality to retain the scroll position when revisiting the transcript and protein view.
- Created useRestoreScrollPosition hook

Clicking on a popular species button for a committed species will open the species homepage instead of removing the species.

- fix checkbox styling in instant protein download component
- show the blue protein bar in the protein image
- show external references in EntityViewer sidebar

Hide the example links popup and display a link to genome browser when the environment is production.