Add gitlab-ci

.gitlab-ci.yaml

+stages:
+  - deploy
+
+.deploy:
+  stage: deploy
+  image: dockerhub.ebi.ac.uk/kamal/deploy-tools:0.2
+
+  before_script:
+    - SERVICE_TAG=`yq r values.yaml fe-services.client-service`
+    - if [ "${SERVICE_TAG}" == "<BRANCH_NAME>" ] ; then echo "Please sepcify <BRANCH_NAME> for FE services" ; exit 1 ; fi
+    - SERVICE_TAG="${SERVICE_TAG//[[:space:]]/}"
+    - SERVICE_SLUG="${SERVICE_TAG//[^[:alnum:]]/-}"
+    - BROWSER_SERVICE_TAG=`yq r values.yaml be-services.browser-service`
+    - BROWSER_SERVICE_TAG="${BROWSER_SERVICE_TAG//[[:space:]]/}"
+    - BROWSER_SERVICE_SLUG="${BROWSER_SERVICE_TAG//[^[:alnum:]]/-}"
+    - GENOME_SEARCH_SERVICE_TAG=`yq r values.yaml be-services.genome-search-service`
+    - GENOME_SEARCH_SERVICE_TAG="${GENOME_SEARCH_SERVICE_TAG//[[:space:]]/}"
+    - GENOME_SEARCH_SERVICE_SLUG="${GENOME_SEARCH_SERVICE_TAG//[^[:alnum:]]/-}"
+    - sed -i "s#<DEPLOYMENT_ENV>#${SERVICE_SLUG}#g" ensembl_client_service_cluster.yaml
+    - sed -i "s#<DEPLOYMENT_ENV>#${SERVICE_SLUG}#g" ensembl_client_ingress.yaml
+    - sed -i "s#<SUB_DOMAIN>#${SERVICE_SLUG}#g" ensembl_client_ingress.yaml
+    - sed -i "s#<DEPLOYMENT_ENV>#${BROWSER_SERVICE_SLUG}#g" ensembl_server_service.yaml
+    - sed -i "s#<DEPLOYMENT_ENV>#${BROWSER_SERVICE_SLUG}#g" ensembl_server_ingress.yaml
+    - sed -i "s#<SUB_DOMAIN>#${SERVICE_SLUG}#g" ensembl_server_ingress.yaml
+    - sed -i "s#<DEPLOYMENT_ENV>#${GENOME_SEARCH_SERVICE_SLUG}#g" ensembl_genome_search_service.yaml
+    - sed -i "s#<DEPLOYMENT_ENV>#${GENOME_SEARCH_SERVICE_SLUG}#g" ensembl_genome_search_ingress.yaml
+    - sed -i "s#<SUB_DOMAIN>#${SERVICE_SLUG}#g" ensembl_genome_search_ingress.yaml   
+
+  script:
+    - kubectl apply -f ensembl_server_service.yaml
+    - kubectl apply -f ensembl_server_ingress.yaml
+    - kubectl apply -f ensembl_genome_search_service.yaml
+    - kubectl apply -f ensembl_genome_search_ingress.yaml
+    - kubectl apply -f ensembl_client_service_cluster.yaml
+    - kubectl apply -f ensembl_client_ingress.yaml
+
+Setup-2020:
+  extends: .deploy
+  environment:
+    name : wp-hx-dev-ing
+  except:
+    - dev
+    - master
\ No newline at end of file

README.md

-# ensembl-k8s-manifests
+
 

ensembl-server-ingress.yaml

+apiVersion: extensions/v1beta1
+kind: Ingress
+metadata:
+  name: ensembl-server-ingress
+  annotations:
+    nginx.ingress.kubernetes.io/rewrite-target: /browser/$2             
+spec:
+  rules:
+  - http:
+      paths:  
+        - path: /browser($|/)(.*)
+          backend:
+            serviceName: ensembl-server-svc
+            servicePort: 8000
\ No newline at end of file

ensembl_client_deployment.yaml

+apiVersion: apps/v1beta1
+kind: Deployment
+metadata: 
+  name: ensembl-client-<DEPLOYMENT_ENV>-deployment
+  annotations:
+    app.gitlab.com/app: <CI_PROJECT_PATH_SLUG>
+    app.gitlab.com/env: <CI_ENVIRONMENT_SLUG>
+spec:
+  replicas: 1
+  template:
+    metadata:
+      labels:
+        app: ensembl-client-<DEPLOYMENT_ENV>
+        RUP: nickl
+    spec:
+      containers:
+      - name: ensembl-client-<DEPLOYMENT_ENV>
+        image: <DOCKER_IMAGE>
+        ports:
+        - containerPort: 8000
+        imagePullPolicy: Always
\ No newline at end of file

ensembl_client_ingress.yaml

+apiVersion: extensions/v1beta1
+kind: Ingress
+metadata:
+  name: ensembl-client-<DEPLOYMENT_ENV>-ingress
+  annotations:
+    nginx.ingress.kubernetes.io/rewrite-target: /
+spec:
+  rules:
+  - host: <SUB_DOMAIN>.review.ensembl.org
+    http:
+      paths:
+      - backend:
+          serviceName: ensembl-client-<DEPLOYMENT_ENV>-svc
+          servicePort: 8000
+        path: /
\ No newline at end of file

ensembl_client_service_cluster.yaml

+apiVersion: v1
+kind: Service
+metadata:
+  name: ensembl-client-<DEPLOYMENT_ENV>-svc
+  labels:
+    app: ensembl-client-<DEPLOYMENT_ENV>-svc
+spec:
+  selector:
+    app: ensembl-client-<DEPLOYMENT_ENV>
+  type: ClusterIP
+  ports:
+    - port: 8000
+      protocol: TCP
+      targetPort: 8000
\ No newline at end of file

ensembl_client_service_node.yaml

+apiVersion: v1
+kind: Service
+metadata:
+  name: ensembl-client-<DEPLOYMENT_ENV>-svc
+  labels:
+    app: ensembl-client-<DEPLOYMENT_ENV>-svc
+spec:
+  selector:
+    app: ensembl-client-<DEPLOYMENT_ENV>
+  type: NodePort
+  ports:
+    - port: 8000
+      protocol: TCP
+      targetPort: 8000
\ No newline at end of file

ensembl_genome_search_cm.yaml

+apiVersion: v1
+data:
+  DEPLOYMENT_SCHEME: http
+kind: ConfigMap
+metadata:
+  name: ensembl-genome-search-<DEPLOYMENT_ENV>-configmap
\ No newline at end of file

ensembl_genome_search_deployment.yaml

+apiVersion: apps/v1beta1
+kind: Deployment
+metadata: 
+  name: ensembl-genome-search-<DEPLOYMENT_ENV>-deployment
+spec:
+  replicas: 1
+  template:
+    metadata:
+      labels:
+        app: ensembl-genome-search-<DEPLOYMENT_ENV>
+        RUP: nickl
+    spec:
+      imagePullSecrets:
+        - name: ensembl-genome-search-pull-secret
+      containers:
+      - name: enesmbl-genome-search-<DEPLOYMENT_ENV>
+        image: <DOCKER_IMAGE>
+        command: ["gunicorn"]
+        args: ["--bind=0.0.0.0:8011", "--preload", "app:app"]
+        ports:
+        - containerPort: 8011
+        imagePullPolicy: Always
+        envFrom:
+        - configMapRef:
+            name: ensembl-genome-search-<DEPLOYMENT_ENV>-configmap
\ No newline at end of file

ensembl_genome_search_ingress.yaml

+apiVersion: extensions/v1beta1
+kind: Ingress
+metadata:
+  name: ensembl-genome-search-<DEPLOYMENT_ENV>-ingress
+  annotations:
+    nginx.ingress.kubernetes.io/rewrite-target: /api/$2                  
+spec:
+  rules:
+  - host: <SUB_DOMAIN>.review.ensembl.org
+    http:
+      paths:
+        - path: /api($|/)(.*)
+          backend:
+            serviceName: ensembl-genome-search-<DEPLOYMENT_ENV>-svc
+            servicePort: 8011
\ No newline at end of file

ensembl_genome_search_service.yaml

+apiVersion: v1
+kind: Service
+metadata:
+  name: ensembl-genome-search-<DEPLOYMENT_ENV>-svc
+  labels:
+    app: ensembl-genome-search-<DEPLOYMENT_ENV>-svc
+spec:
+  selector:
+    app: ensembl-genome-search-<DEPLOYMENT_ENV>
+  type: ClusterIP
+  ports:
+    - port: 8011
+      protocol: TCP
+      targetPort: 8011
\ No newline at end of file

ensembl_genome_search_service_node.yaml

+apiVersion: v1
+kind: Service
+metadata:
+  name: ensembl-genome-search-<DEPLOYMENT_ENV>-svc
+  labels:
+    app: ensembl-genome-search-<DEPLOYMENT_ENV>-svc
+spec:
+  selector:
+    app: ensembl-genome-search-<DEPLOYMENT_ENV>
+  type: NodePort
+  ports:
+    - port: 8011
+      protocol: TCP
+      targetPort: 8011
\ No newline at end of file

ensembl_server_deployment.yaml

+apiVersion: apps/v1beta1
+kind: Deployment
+metadata: 
+  name: ensembl-server-<DEPLOYMENT_ENV>-deployment
+spec:
+  replicas: 1
+  template:
+    metadata:
+      labels:
+        app: ensembl-server-<DEPLOYMENT_ENV>
+        RUP: nickl
+    spec:
+      imagePullSecrets:
+        - name: ensembl-server-pull-secret
+      containers:
+      - name: ensembl-server-<DEPLOYMENT_ENV>
+        image: <DOCKER_IMAGE>
+        command: ["gunicorn"]
+        args: ["--bind=0.0.0.0:4000", "--preload", "-t 120", "server:app"]
+        ports:
+        - containerPort: 4000
+        imagePullPolicy: Always
+        env:
+        - name: ett_data_path
+          value: "/usr/data/e2020-data"
+        volumeMounts:
+        - mountPath: /usr/data
+          name: ett-server-data-vol
+
+      volumes:
+        - name: ett-server-data-vol
+          persistentVolumeClaim:
+            claimName: ett-data-pvc
\ No newline at end of file

ensembl_server_ingress.yaml

+apiVersion: extensions/v1beta1
+kind: Ingress
+metadata:
+  name: ensembl-server-<DEPLOYMENT_ENV>-ingress
+  annotations:
+    nginx.ingress.kubernetes.io/rewrite-target: /browser/$2             
+spec:
+  rules:
+  - host: <SUB_DOMAIN>.review.ensembl.org
+    http:
+      paths:  
+        - path: /browser($|/)(.*)
+          backend:
+            serviceName: ensembl-server-<DEPLOYMENT_ENV>-svc
+            servicePort: 8000
\ No newline at end of file

ensembl_server_service.yaml

+apiVersion: v1
+kind: Service
+metadata:
+  name: ensembl-server-<DEPLOYMENT_ENV>-svc
+  labels:
+    app: ensembl-server-<DEPLOYMENT_ENV>-svc
+spec:
+  selector:
+    app: ensembl-server-<DEPLOYMENT_ENV>
+  type: ClusterIP
+  ports:
+    - port: 8000
+      protocol: TCP
+      targetPort: 4000
\ No newline at end of file

ensembl_server_service_node.yaml

+apiVersion: v1
+kind: Service
+metadata:
+  name: ensembl-server-<DEPLOYMENT_ENV>-svc
+  labels:
+    app: ensembl-server-<DEPLOYMENT_ENV>-svc
+spec:
+  selector:
+    app: ensembl-server-<DEPLOYMENT_ENV>
+  type: NodePort
+  ports:
+    - port: 8000
+      protocol: TCP
+      targetPort: 4000
\ No newline at end of file

refget-db-endpoint.yaml

+kind: Endpoints
+apiVersion: v1
+metadata:
+  name: refget-db-service
+subsets:
+  - addresses:
+      # IP Address of mysql db
+      - ip: pgsql-hxvm7-044
+    ports:
+      # Port
+      - port: 5432
\ No newline at end of file

refget-db-service.yaml

+kind: Service
+apiVersion: v1
+metadata:
+  name: refget-db-service
+spec:
+  ports:
+  - protocol: TCP
+    port: 5432
+    targetPort: 5432
\ No newline at end of file

refget-ext-db-svc.yaml

+kind: Service
+apiVersion: v1
+metadata:
+  name: refget-ext-db-svc
+spec:
+  type: ExternalName
+  externalName: pgsql-hxvm7-044.ebi.ac.uk
\ No newline at end of file

values.yaml

+fe-services:
+  client-service: <BRANCH_NAME>
+be-services:
+  browser-service: dev
+  genome-search-service: dev
\ No newline at end of file