Integrate refget

.gitlab-ci.yml

@@ -6,6 +6,7 @@ variables:
   GENOME_SEARCH_SERVICE_SLUG: dev
   TOYGRAPHQL_SERVICE_SLUG: dev
   THOAS_SERVICE_SLUG: dev
+  REFGET_SERVICE_SLUG: dev
 
 .deploy:
   stage: deploy
@@ -28,6 +29,9 @@ variables:
     - THOAS_SERVICE_TAG=`yq r values.yaml be-services.thoas-service`
     - THOAS_SERVICE_TAG="${THOAS_SERVICE_TAG//[[:space:]]/}"
     - THOAS_SERVICE_SLUG="${THOAS_SERVICE_TAG//[^[:alnum:]]/-}"
+    - REFGET_SERVICE_TAG=`yq r values.yaml be-services.refget-service`
+    - REFGET_SERVICE_TAG="${REFGET_SERVICE_TAG//[[:space:]]/}"
+    - REFGET_SERVICE_SLUG="${REFGET_SERVICE_TAG//[^[:alnum:]]/-}"
     # ensembl-client
     - sed -i "s#<DEPLOYMENT_ENV>#${SERVICE_SLUG}#g" ensembl_client_service_cluster.yaml
     - sed -i "s#<DEPLOYMENT_ENV>#${SERVICE_SLUG}#g" ensembl_client_ingress.yaml
@@ -48,7 +52,14 @@ variables:
     - sed -i "s#<DEPLOYMENT_ENV>#${THOAS_SERVICE_SLUG}#g" ensembl_thoas_service.yaml
     - sed -i "s#<DEPLOYMENT_ENV>#${THOAS_SERVICE_SLUG}#g" ensembl_thoas_ingress.yaml
     - sed -i "s#<SUB_DOMAIN>#${SERVICE_SLUG}#g" ensembl_thoas_ingress.yaml 
+    # ensembl-refget
+    - sed -i "s#<DEPLOYMENT_ENV>#${REFGET_SERVICE_SLUG}#g" ensembl_refget_service.yaml
+    - sed -i "s#<DEPLOYMENT_ENV>#${REFGET_SERVICE_SLUG}#g" ensembl_refget_ingress.yaml
+    - sed -i "s#<SUB_DOMAIN>#${SERVICE_SLUG}#g" ensembl_refget_ingress.yaml 
   script:
+    # ensembl-refget
+    - kubectl apply -f ensembl_refget_service.yaml
+    - kubectl apply -f ensembl_refget_ingress.yaml
     # ensembl-thoas
     - kubectl apply -f ensembl_thoas_service.yaml
     - kubectl apply -f ensembl_thoas_ingress.yaml

ensembl_refget_ingress.yaml

+apiVersion: extensions/v1beta1
+kind: Ingress
+metadata:
+  name: refget-perl-server-<SUB_DOMAIN>-ingress
+  annotations:
+    nginx.ingress.kubernetes.io/rewrite-target: /$2           
+spec:
+  rules:
+  - host: <SUB_DOMAIN>.review.ensembl.org
+    http:
+      paths:  
+        - path: /refget($|/)(.*)
+          backend:
+            serviceName: refget-perl-server-<DEPLOYMENT_ENV>-svc
+            servicePort: 8080
\ No newline at end of file

ensembl_refget_service.yaml

+apiVersion: v1
+kind: Service
+metadata:
+  name: refget-perl-server-<DEPLOYMENT_ENV>-svc
+  labels:
+    app: refget-perl-server-<DEPLOYMENT_ENV>-svc
+spec:
+  selector:
+    app: refget-perl-server-<DEPLOYMENT_ENV>
+  type: NodePort
+  ports:
+    - port: 8080
+      protocol: TCP
+      targetPort: 8080

values.yaml

@@ -5,3 +5,4 @@ be-services:
   genome-search-service: dev
   toygraphql-service: dev
   thoas-service: dev
+  refget-service: dev
\ No newline at end of file