From 9d6d4c6f9f2fff444cf0b0a71dd84709239adb72 Mon Sep 17 00:00:00 2001
From: Benjamin Wingfield <bwingfield@ebi.ac.uk>
Date: Mon, 26 Jun 2023 13:18:04 +0100
Subject: [PATCH] set up dockerfile + action
---
.github/workflows/push_dev.yml | 78 ++++++++++++++++++++++++++++++++++
Dockerfile | 13 ++++++
2 files changed, 91 insertions(+)
create mode 100644 .github/workflows/push_dev.yml
create mode 100644 Dockerfile
diff --git a/.github/workflows/push_dev.yml b/.github/workflows/push_dev.yml
new file mode 100644
index 0000000..17f1089
--- /dev/null
+++ b/.github/workflows/push_dev.yml
@@ -0,0 +1,78 @@
+name: build development images
+
+on:
+ push:
+ branches:
+ - dev
+
+env:
+ REGISTRY_USERNAME: ${{ secrets.DOCKER_USERNAME }}
+ REGISTRY_TOKEN: ${{ secrets.DOCKER_TOKEN }}
+ DOCKER_REGISTRY_LOGIN: "dockerhub.ebi.ac.uk"
+ SINGULARITY_REGISTRY_LOGIN: "oras://dockerhub.ebi.ac.uk"
+ DOCKER_REGISTRY: "dockerhub.ebi.ac.uk/gdp-public/hattivatti"
+ SINGULARITY_REGISTRY: "oras://dockerhub.ebi.ac.uk/gdp-public/hattivatti/singularity"
+ SINGULARITY_VERSION: "3.8.3"
+
+jobs:
+ build_docker_dev:
+ name: build docker development image
+ runs-on: ubuntu-latest
+
+ steps:
+ - name: Set up QEMU
+ uses: docker/setup-qemu-action@v2
+ with:
+ platforms: arm64
+
+ - name: Set up Docker Buildx
+ uses: docker/setup-buildx-action@v2
+
+ - name: Login to Docker Hub
+ uses: docker/login-action@v2
+ with:
+ registry: ${{ env.DOCKER_REGISTRY_LOGIN }}
+ username: ${{ env.REGISTRY_USERNAME }}
+ password: ${{ env.REGISTRY_TOKEN }}
+
+ - name: Build and push
+ uses: docker/build-push-action@v3
+ with:
+ push: true
+ platforms: "linux/amd64,linux/arm64"
+ tags: ${{ env.DOCKER_REGISTRY }}/hattivatti:dev
+
+ build_singularity_dev:
+ needs: build_docker_dev
+ name: build singularity development image
+ runs-on: ubuntu-latest
+
+ steps:
+ - name: Check out pipeline code
+ uses: actions/checkout@v3
+
+ - name: Cache singularity setup
+ id: cache-singularity
+ uses: actions/cache@v3
+ with:
+ path: /opt/hostedtoolcache/singularity/${{ env.SINGULARITY_VERSION }}/x64
+ key: ${{ runner.os }}-singularity-${{ env.SINGULARITY_VERSION }}
+
+ - name: Set up Singularity
+ uses: eWaterCycle/setup-singularity@v7
+ if: steps.cache-singularity.outputs.cache-hit != 'true'
+ with:
+ singularity-version: ${{ env.SINGULARITY_VERSION }}
+
+ - name: Add singularity to path
+ if: steps.cache-singularity.outputs.cache-hit == 'true'
+ run: |
+ echo "/opt/hostedtoolcache/singularity/${{ env.SINGULARITY_VERSION }}/x64/bin" >> $GITHUB_PATH
+
+ - name: Build singularity image
+ run: singularity build img.sif "docker://${DOCKER_REGISTRY}/hattivatti:dev"
+
+ - name: Push singularity image
+ run: |
+ echo "$REGISTRY_TOKEN" | singularity remote login -u "$REGISTRY_USERNAME" --password-stdin "$SINGULARITY_REGISTRY_LOGIN"
+ singularity push img.sif "${SINGULARITY_REGISTRY}/hattivatti:dev"
diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 0000000..6cb5324
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,13 @@
+FROM --platform=linux/amd64 rust:bookworm AS build
+
+WORKDIR /opt/build
+
+COPY . ./
+
+RUN cargo build --target x86_64-unknown-linux-gnu
+
+FROM --platform=linux/amd64 debian:stable-slim
+
+COPY --from=build /opt/build/target/x86_64-unknown-linux-gnu/debug/hattivatti /opt/
+
+CMD ["/opt/hattivatti"]
\ No newline at end of file
--
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