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ensembl-gh-mirror
Issues

Open 7
Closed 56
All 63

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

Bio__DB__HTS__VCFfile now defined twice

Bio-DB-HTS#72 · created Apr 30, 2018 by Marek Szuba
- CLOSED
- 1
updated May 01, 2018
Dockerfile rest service

ensembl-rest#245 · created Mar 21, 2018 by Marek Szuba
- CLOSED
- 4
updated Jun 29, 2018
VCF/BCF returning the raw header

Bio-DB-HTS#70 · created Mar 21, 2018 by Marek Szuba enhancement
- CLOSED
- 1
updated Mar 21, 2018
Multiple, conflicting, index memory release attempts may lead to segfault

Bio-DB-HTS#67 · created Mar 19, 2018 by Marek Szuba bug
- CLOSED
- 14
updated Mar 20, 2018
Add memory leak cases to test suite

Bio-DB-HTS#66 · created Mar 19, 2018 by Marek Szuba enhancement
- CLOSED
- 6
updated Mar 20, 2018
Travis to test with multiple htslib versions

Bio-DB-HTS#63 · created Mar 14, 2018 by Marek Szuba enhancement
- CLOSED
- 1
updated Mar 14, 2018
htslib 1.3.1 (and older) non-compatible header_read for SAM

Bio-DB-HTS#62 · created Mar 14, 2018 by Marek Szuba bug help wanted
- CLOSED
- 5
updated Mar 16, 2018
HTSfile::reindex with CRAM: renaming after sorting expects BAM

Bio-DB-HTS#60 · created Mar 05, 2018 by Marek Szuba
- CLOSED
- 1
updated Mar 06, 2018
Archives install script tied to master

Bio-DB-HTS#59 · created Mar 02, 2018 by Marek Szuba
- CLOSED
- 3
updated Mar 15, 2018
Does not support csi index

Bio-DB-HTS#57 · created Feb 08, 2018 by Marek Szuba
- CLOSED
- 9
updated Mar 05, 2018
BCF indexing

Bio-DB-HTS#55 · created Jul 14, 2017 by Marek Szuba enhancement
- CLOSED
- 3
updated Apr 16, 2018
'missing SAM header' when opening SAM files

Bio-DB-HTS#54 · created Jul 11, 2017 by Marek Szuba bug
- CLOSED
- 1
updated Mar 13, 2018
Switch to using hisremote

Bio-DB-HTS#46 · created Jun 16, 2017 by Marek Szuba enhancement
- CLOSED
- 1
updated Jun 17, 2017
The install script fails with GNU Wget 1.12

Bio-DB-HTS#44 · created Jun 16, 2017 by Marek Szuba
- CLOSED
- 4
updated Jun 17, 2017
BufferOverflow error

Bio-DB-HTS#39 · created Jan 27, 2017 by Marek Szuba
- CLOSED
- 3
updated Jan 28, 2017
Coverage from Cram input

Bio-DB-HTS#37 · created Nov 02, 2016 by Marek Szuba
- CLOSED
- 4
updated Nov 08, 2016
Error while installing VEP

Bio-DB-HTS#33 · created Aug 13, 2016 by Marek Szuba
- CLOSED
- 2
updated Aug 16, 2016
Incorrect name in for repeated magic block

XML-To-Blockly#9 · created Aug 10, 2016 by Marek Szuba
- CLOSED
- 2
updated Aug 23, 2016
Ancillary items from Bio-SamTools

Bio-DB-HTS#32 · created Aug 09, 2016 by Marek Szuba
- CLOSED
- 5
updated Aug 10, 2016
Why didn't you just rename the repo?

Bio-DB-HTS#31 · created Aug 04, 2016 by Marek Szuba
- CLOSED
- 2
updated Aug 05, 2016

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