Merge requests · ensembl-gh-mirror

added taxonomy adaptor support

ensembl!97 · created Nov 11, 2015 by Marek Szuba master
- Merged
- 15
updated Nov 12, 2015
Added some description filters and corrected the SPTREMBL source

ensembl!93 · created Oct 27, 2015 by Kevin Howe master
- Merged
- 1
updated Oct 27, 2015
Feature 83/strain slice tests

ensembl!95 · created Nov 02, 2015 by Marek Szuba master
- Merged
- 4
updated Nov 09, 2015
Add new DBAdaptor

ensembl!92 · created Oct 20, 2015 by Marek Szuba master
- Merged
- 3
updated Oct 28, 2015
vport and cport options are now used in the code

ensembl!91 · created Oct 20, 2015 by Marek Szuba master
- Merged
- 1
updated Oct 20, 2015
Need to clean-up the additional lookups too

ensembl!81 · created Aug 11, 2015 by Marek Szuba master
- Merged
- 7
updated Aug 12, 2015
Revert "fastmap expects seq region name not id"

ensembl!80 · created Aug 10, 2015 by Marek Szuba master
- Merged
updated Aug 10, 2015
Master

ensembl!89 · created Oct 13, 2015 by Kevin Howe master
- Merged
- 4
updated Oct 13, 2015
Experimental/merged alternative sequence store

ensembl!86 · created Sep 04, 2015 by Marek Szuba master
- Merged
- 12
updated Dec 01, 2015
Die if there is no available config file in Registry::load_all()

ensembl!84 · created Sep 02, 2015 by Marek Szuba master
- Merged
- 9
updated Mar 08, 2016
Update GTFSerializer.pm

ensembl!83 · created Sep 01, 2015 by Marek Szuba master
- Merged
- 1
updated Sep 02, 2015
Update individual to sample to match the new variation schema

ensembl!70 · created May 19, 2015 by Marek Szuba master
- Merged
- 11
updated May 21, 2015
Fixed fetch_all_by_Slice_and_external_dbname_link

ensembl!78 · created Aug 07, 2015 by Marek Szuba master
- Merged
- 5
updated Aug 12, 2015
Experimental/alternative sequence stores

ensembl!72 · created Jun 18, 2015 by Marek Szuba master
- Merged
- 8
updated Aug 02, 2015
Fix server connection details for Ensembl Genomes

ensembl!50 · created Jan 14, 2015 by Kevin Howe master
- Merged
- 2
updated Jan 14, 2015
Remove some old modules

ensembl!57 · created Feb 13, 2015 by Marek Szuba master
- Merged
- 2
updated Feb 13, 2015
xref field width patch

ensembl!77 · created Jul 20, 2015 by Marek Szuba master
- Merged
- 4
updated Jul 21, 2015
Supporting the genepred format. Required changes to existing BED code

ensembl!76 · created Jul 20, 2015 by Marek Szuba master
- Merged
- 7
updated Dec 01, 2015
Removed method 'set_source_id_to_external_name' to revert back to the default behaviour which is to report the display db name in the source field of the gene description.

ensembl!42 · created Nov 27, 2014 by Marek Szuba master
- Merged
- 1
updated Nov 27, 2014
Mg13/77/fix sqlite timestamps

ensembl!56 · created Feb 13, 2015 by Marek Szuba release/77
- Merged
- 1
updated Feb 13, 2015