web-components issueshttps://gitlab.ebi.ac.uk/groups/pdbe/web-components/-/issues2019-02-05T17:10:33Zhttps://gitlab.ebi.ac.uk/pdbe/web-components/ligand-env/-/issues/14make sure text does not clip the border of elements2019-02-05T17:10:33ZLukas Pravdamake sure text does not clip the border of elements@mvaradi said: "I would try to ensure that the text never clips with the shape outline - currently with circle shaped nodes you have text overlapping with the borders"@mvaradi said: "I would try to ensure that the text never clips with the shape outline - currently with circle shaped nodes you have text overlapping with the borders"Lukas PravdaLukas Pravdahttps://gitlab.ebi.ac.uk/pdbe/web-components/ligand-env/-/issues/13rethink border color of the graphical elements2019-03-21T17:02:34ZLukas Pravdarethink border color of the graphical elements@mvaradi said: "I'm not sure why some circles have grey borders, and others are black - the legends don't mention reasons for this"@mvaradi said: "I'm not sure why some circles have grey borders, and others are black - the legends don't mention reasons for this"Lukas PravdaLukas Pravdahttps://gitlab.ebi.ac.uk/pdbe/web-components/ligand-env/-/issues/12Change pointer based on the context2019-02-05T17:10:36ZLukas PravdaChange pointer based on the context@mvaradi said: "When going one level below the main (i.e. clicking on something that is part of the ligand), it would be nice to have a quick and obvious way of going back. It was not clear to me that the home button would do the trick. ...@mvaradi said: "When going one level below the main (i.e. clicking on something that is part of the ligand), it would be nice to have a quick and obvious way of going back. It was not clear to me that the home button would do the trick. I also didn't know what happened when I suddenly got down to the sub-level after merrily clicking around :) (I.e. I first clicked nodes that didn't take me anywhere, and then suddenly I clicked on a node that did, and I was like "damn, how do I get back")"Lukas PravdaLukas Pravdahttps://gitlab.ebi.ac.uk/pdbe/web-components/ligand-env/-/issues/9Make legend visible at the begining2019-02-19T23:05:28ZLukas PravdaMake legend visible at the begining@mvaradi said: "I would find it better to have the legends visible at all time, without (first trying to find and then) turning it on with the ? button"@mvaradi said: "I would find it better to have the legends visible at all time, without (first trying to find and then) turning it on with the ? button"Lukas PravdaLukas Pravdahttps://gitlab.ebi.ac.uk/pdbe/web-components/ligand-env/-/issues/7zoom issues on all devices2019-03-21T16:47:07ZLukas Pravdazoom issues on all devicesThis has been introduced after the cetenring functionality has been implementedThis has been introduced after the cetenring functionality has been implementedLukas PravdaLukas Pravdahttps://gitlab.ebi.ac.uk/pdbe/web-components/ligand-env/-/issues/6Glycans are broken on firefox2019-02-04T09:41:23ZLukas PravdaGlycans are broken on firefoxFor some reason the graphical primitives on firefox (mac os) are not displayed at all.
![Screenshot_2019-01-29_at_09.39.51](/uploads/a0fc5a17a86b35741ed88d9b628dfefa/Screenshot_2019-01-29_at_09.39.51.png)For some reason the graphical primitives on firefox (mac os) are not displayed at all.
![Screenshot_2019-01-29_at_09.39.51](/uploads/a0fc5a17a86b35741ed88d9b628dfefa/Screenshot_2019-01-29_at_09.39.51.png)Lukas PravdaLukas Pravdahttps://gitlab.ebi.ac.uk/pdbe/web-components/ligand-env/-/issues/3Distinguish sidechain vs. mainchain interactions2020-02-24T12:00:51ZLukas PravdaDistinguish sidechain vs. mainchain interactionsGraphically distinguis sidechain and mainchain interactionsGraphically distinguis sidechain and mainchain interactionsLukas PravdaLukas Pravdahttps://gitlab.ebi.ac.uk/pdbe/web-components/ligand-env/-/issues/1Draw all sugar classes2019-01-28T14:18:14ZLukas PravdaDraw all sugar classesglycans.xml needs to be extended! The list to use can be found here: https://www.ncbi.nlm.nih.gov/glycans/snfg.html
Presently only these classes are drawn:
* Hexose
* HexNAc
* Hexosamine
* Hexuronate
* Deoxyhexose
These needs to be ad...glycans.xml needs to be extended! The list to use can be found here: https://www.ncbi.nlm.nih.gov/glycans/snfg.html
Presently only these classes are drawn:
* Hexose
* HexNAc
* Hexosamine
* Hexuronate
* Deoxyhexose
These needs to be added:
* DeoxyhexNAc
* Di-deoxyhexose
* Pentose
* Deoxynonulosonate
* Di-deoxynonulosonate
* Unkwnown
* AssignedLukas PravdaLukas Pravdahttps://gitlab.ebi.ac.uk/pdbe/web-components/ligand-env/-/issues/8Highlight bound molecule2019-03-21T17:03:13ZLukas PravdaHighlight bound molecule@mvaradi said: "It would be helpful if somehow it would be more apparent which nodes are actually part of the ligand. Something like making the edges of the ligand wider perhaps?"@mvaradi said: "It would be helpful if somehow it would be more apparent which nodes are actually part of the ligand. Something like making the edges of the ligand wider perhaps?"Lukas PravdaLukas Pravda