web-components issueshttps://gitlab.ebi.ac.uk/groups/pdbe/web-components/-/issues2019-01-03T17:29:02Zhttps://gitlab.ebi.ac.uk/pdbe/web-components/ligand-env/-/issues/2Set up a process and API to identify carbohydrates2019-01-03T17:29:02ZLukas PravdaSet up a process and API to identify carbohydratesPresently we rely on manually curated [list](https://www.ebi.ac.uk/seqdb/confluence/display/PDBE/LiteMol+3D+glycan+representation) created by Matt. This needs to be improved!
Ideally a process which is a part of PDBeChem pipeline is imp...Presently we rely on manually curated [list](https://www.ebi.ac.uk/seqdb/confluence/display/PDBE/LiteMol+3D+glycan+representation) created by Matt. This needs to be improved!
Ideally a process which is a part of PDBeChem pipeline is implemented to find sugars and stores results in the database.Lukas PravdaLukas Pravdahttps://gitlab.ebi.ac.uk/pdbe/web-components/ligand-env/-/issues/4Add full-atom view of bound molecules2019-01-28T14:27:49ZLukas PravdaAdd full-atom view of bound moleculesExplore how to create bound molecules in RDkit, test a few examples and then possibly add these as a part of the interactions pipelineExplore how to create bound molecules in RDkit, test a few examples and then possibly add these as a part of the interactions pipelineLukas PravdaLukas Pravdahttps://gitlab.ebi.ac.uk/pdbe/web-components/ligand-env/-/issues/5Bear color blind people in mind2019-01-28T14:26:39ZLukas PravdaBear color blind people in mindThe question is whether or not the colour-coding schema should reflect colour blind people all the time. It is a good practice to do so, however the price to pay is that we will not use the color coding people from chemistry and biology ...The question is whether or not the colour-coding schema should reflect colour blind people all the time. It is a good practice to do so, however the price to pay is that we will not use the color coding people from chemistry and biology background are used to.
https://www.color-blindness.com/coblis-color-blindness-simulator/Lukas PravdaLukas Pravdahttps://gitlab.ebi.ac.uk/pdbe/web-components/ligand-env/-/issues/10Display tooltips next to the place where they are relevant2019-02-05T14:49:07ZLukas PravdaDisplay tooltips next to the place where they are relevant@mvaradi said: "Maybe it would be more understandable if the tooltips for the details of interactions would appear right where the cursor is, instead of the top left corner"@mvaradi said: "Maybe it would be more understandable if the tooltips for the details of interactions would appear right where the cursor is, instead of the top left corner"Lukas PravdaLukas Pravdahttps://gitlab.ebi.ac.uk/pdbe/web-components/ligand-env/-/issues/11Display long name of ligands2019-02-05T14:50:42ZLukas PravdaDisplay long name of ligands@mvaradi said: "Perhaps you could also show the long ligand names on tooltip? HET code might not be clear for some more obscure ligands"@mvaradi said: "Perhaps you could also show the long ligand names on tooltip? HET code might not be clear for some more obscure ligands"Lukas PravdaLukas Pravda